Hb_001677_140

Information

Type -
Description -
Location Contig1677: 104186-106207
Sequence    

Annotation

kegg
ID cit:102622520
description uncharacterized LOC102622520
nr
ID XP_006470686.1
description PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID U7DXV7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0081s00240g PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_140 0.0 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
2 Hb_128851_020 0.0401126485 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_010136_020 0.0415939909 - - stress-induced receptor-like kinase [Medicago truncatula]
4 Hb_110356_010 0.0444411339 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
5 Hb_002006_110 0.0445118615 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
6 Hb_036754_040 0.0495268115 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_034581_010 0.0514002815 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
8 Hb_001511_200 0.0539336012 - - Embryonic abundant protein, putative [Ricinus communis]
9 Hb_002548_030 0.0580660987 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
10 Hb_000359_230 0.0602238355 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
11 Hb_099188_010 0.0644295419 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_184752_010 0.0845270051 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
13 Hb_019978_010 0.0912824687 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
14 Hb_157957_010 0.0927339007 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
15 Hb_004724_290 0.1021604058 transcription factor TF Family: NAC -
16 Hb_010477_020 0.1036091801 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
17 Hb_006916_220 0.1048354655 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
18 Hb_004724_310 0.1092292262 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
19 Hb_187620_010 0.1134090458 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
20 Hb_003207_230 0.1147104547 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]

Gene co-expression network

sample Hb_001677_140 Hb_001677_140 Hb_128851_020 Hb_128851_020 Hb_001677_140--Hb_128851_020 Hb_010136_020 Hb_010136_020 Hb_001677_140--Hb_010136_020 Hb_110356_010 Hb_110356_010 Hb_001677_140--Hb_110356_010 Hb_002006_110 Hb_002006_110 Hb_001677_140--Hb_002006_110 Hb_036754_040 Hb_036754_040 Hb_001677_140--Hb_036754_040 Hb_034581_010 Hb_034581_010 Hb_001677_140--Hb_034581_010 Hb_001511_200 Hb_001511_200 Hb_128851_020--Hb_001511_200 Hb_099188_010 Hb_099188_010 Hb_128851_020--Hb_099188_010 Hb_128851_020--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_128851_020--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_128851_020--Hb_000359_230 Hb_010136_020--Hb_002006_110 Hb_010136_020--Hb_036754_040 Hb_019978_010 Hb_019978_010 Hb_010136_020--Hb_019978_010 Hb_184752_010 Hb_184752_010 Hb_010136_020--Hb_184752_010 Hb_010136_020--Hb_034581_010 Hb_110356_010--Hb_002548_030 Hb_110356_010--Hb_000359_230 Hb_110356_010--Hb_034581_010 Hb_110356_010--Hb_099188_010 Hb_002006_110--Hb_036754_040 Hb_002006_110--Hb_019978_010 Hb_002006_110--Hb_184752_010 Hb_004724_290 Hb_004724_290 Hb_002006_110--Hb_004724_290 Hb_036754_040--Hb_034581_010 Hb_036754_040--Hb_019978_010 Hb_036754_040--Hb_110356_010 Hb_034581_010--Hb_002548_030 Hb_034581_010--Hb_000359_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0956053 0.0460337 0.0360189 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis