Hb_001511_200

Information

Type -
Description -
Location Contig1511: 248648-249006
Sequence    

Annotation

kegg
ID rcu:RCOM_0838360
description Embryonic abundant protein, putative
nr
ID XP_002528309.1
description Embryonic abundant protein, putative [Ricinus communis]
swissprot
ID C6T0L2
description Protein SLE3 OS=Glycine max GN=SLE3 PE=2 SV=1
trembl
ID B9SQP0
description Embryonic abundant protein, putative OS=Ricinus communis GN=RCOM_0838360 PE=4 SV=1
Gene Ontology
ID GO:0009640
description em-like protein gea6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_200 0.0 - - Embryonic abundant protein, putative [Ricinus communis]
2 Hb_128851_020 0.0345246902 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_001677_140 0.0539336012 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
4 Hb_010136_020 0.077847967 - - stress-induced receptor-like kinase [Medicago truncatula]
5 Hb_002006_110 0.0793277776 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
6 Hb_099188_010 0.0796404171 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_000668_220 0.0852928789 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
8 Hb_110356_010 0.090608019 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
9 Hb_036754_040 0.0953832028 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_007546_010 0.0953928723 - - unnamed protein product [Vitis vinifera]
11 Hb_184752_010 0.0970076655 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
12 Hb_008637_020 0.0972822482 - - conserved hypothetical protein [Ricinus communis]
13 Hb_034581_010 0.0984679347 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
14 Hb_002548_030 0.100266679 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
15 Hb_000359_230 0.1026635509 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
16 Hb_004724_310 0.1050814752 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
17 Hb_000373_220 0.1069646878 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_000714_080 0.1072693562 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
19 Hb_006916_220 0.1074300845 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
20 Hb_002066_050 0.1086315524 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_001511_200 Hb_001511_200 Hb_128851_020 Hb_128851_020 Hb_001511_200--Hb_128851_020 Hb_001677_140 Hb_001677_140 Hb_001511_200--Hb_001677_140 Hb_010136_020 Hb_010136_020 Hb_001511_200--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001511_200--Hb_002006_110 Hb_099188_010 Hb_099188_010 Hb_001511_200--Hb_099188_010 Hb_000668_220 Hb_000668_220 Hb_001511_200--Hb_000668_220 Hb_128851_020--Hb_001677_140 Hb_128851_020--Hb_099188_010 Hb_110356_010 Hb_110356_010 Hb_128851_020--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_128851_020--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_128851_020--Hb_000359_230 Hb_001677_140--Hb_010136_020 Hb_001677_140--Hb_110356_010 Hb_001677_140--Hb_002006_110 Hb_036754_040 Hb_036754_040 Hb_001677_140--Hb_036754_040 Hb_034581_010 Hb_034581_010 Hb_001677_140--Hb_034581_010 Hb_010136_020--Hb_002006_110 Hb_010136_020--Hb_036754_040 Hb_019978_010 Hb_019978_010 Hb_010136_020--Hb_019978_010 Hb_184752_010 Hb_184752_010 Hb_010136_020--Hb_184752_010 Hb_010136_020--Hb_034581_010 Hb_002006_110--Hb_036754_040 Hb_002006_110--Hb_019978_010 Hb_002006_110--Hb_184752_010 Hb_004724_290 Hb_004724_290 Hb_002006_110--Hb_004724_290 Hb_099188_010--Hb_002548_030 Hb_099188_010--Hb_000359_230 Hb_099188_010--Hb_110356_010 Hb_099188_010--Hb_001677_140 Hb_099188_010--Hb_034581_010 Hb_173029_010 Hb_173029_010 Hb_000668_220--Hb_173029_010 Hb_004241_190 Hb_004241_190 Hb_000668_220--Hb_004241_190 Hb_000373_220 Hb_000373_220 Hb_000668_220--Hb_000373_220 Hb_053935_010 Hb_053935_010 Hb_000668_220--Hb_053935_010 Hb_000628_050 Hb_000628_050 Hb_000668_220--Hb_000628_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.19731 3.22834 2.52372 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis