Hb_004241_190

Information

Type -
Description -
Location Contig4241: 194557-195879
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0004713
description g-type lectin s-receptor-like serine threonine-protein kinase sd1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_190 0.0 - - -
2 Hb_053935_010 0.0400540383 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
3 Hb_000061_060 0.0425545935 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
4 Hb_000373_220 0.0528583616 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_000628_050 0.0529340571 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_173029_010 0.0544080991 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_128460_020 0.0558878692 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
8 Hb_000668_220 0.0559201897 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
9 Hb_014361_140 0.0681433604 - - PREDICTED: peroxidase 51 [Jatropha curcas]
10 Hb_158110_010 0.0798993886 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
11 Hb_005773_010 0.0934238371 - - -
12 Hb_104855_010 0.0953910254 - - -
13 Hb_004924_020 0.1057860087 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_010369_010 0.1151168548 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000904_110 0.1152302067 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
16 Hb_137349_010 0.1158818313 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
17 Hb_116103_010 0.1159113622 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
18 Hb_000072_010 0.1176991137 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
19 Hb_000769_030 0.1177859876 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_008963_010 0.1286786019 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004241_190 Hb_004241_190 Hb_053935_010 Hb_053935_010 Hb_004241_190--Hb_053935_010 Hb_000061_060 Hb_000061_060 Hb_004241_190--Hb_000061_060 Hb_000373_220 Hb_000373_220 Hb_004241_190--Hb_000373_220 Hb_000628_050 Hb_000628_050 Hb_004241_190--Hb_000628_050 Hb_173029_010 Hb_173029_010 Hb_004241_190--Hb_173029_010 Hb_128460_020 Hb_128460_020 Hb_004241_190--Hb_128460_020 Hb_053935_010--Hb_128460_020 Hb_053935_010--Hb_000373_220 Hb_053935_010--Hb_000061_060 Hb_014361_140 Hb_014361_140 Hb_053935_010--Hb_014361_140 Hb_158110_010 Hb_158110_010 Hb_053935_010--Hb_158110_010 Hb_000061_060--Hb_014361_140 Hb_000061_060--Hb_128460_020 Hb_104855_010 Hb_104855_010 Hb_000061_060--Hb_104855_010 Hb_000061_060--Hb_158110_010 Hb_000373_220--Hb_128460_020 Hb_000668_220 Hb_000668_220 Hb_000373_220--Hb_000668_220 Hb_000373_220--Hb_000061_060 Hb_000373_220--Hb_014361_140 Hb_000628_050--Hb_173029_010 Hb_005773_010 Hb_005773_010 Hb_000628_050--Hb_005773_010 Hb_000628_050--Hb_000061_060 Hb_000628_050--Hb_000668_220 Hb_000628_050--Hb_053935_010 Hb_173029_010--Hb_000668_220 Hb_173029_010--Hb_000373_220 Hb_173029_010--Hb_053935_010 Hb_000904_110 Hb_000904_110 Hb_173029_010--Hb_000904_110 Hb_128460_020--Hb_014361_140 Hb_128460_020--Hb_158110_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.289758 0.206972 0.29788 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis