Hb_173029_010

Information

Type -
Description -
Location Contig173029: 389-3289
Sequence    

Annotation

kegg
ID rcu:RCOM_1186840
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002527459.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SN90
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1186840 PE=3 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173029_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000668_220 0.0367329554 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
3 Hb_004241_190 0.0544080991 - - -
4 Hb_000628_050 0.0575742084 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000373_220 0.0844955042 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_053935_010 0.0871253178 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
7 Hb_000904_110 0.0896141463 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
8 Hb_116103_010 0.0906072779 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
9 Hb_005928_010 0.093741871 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
10 Hb_001002_020 0.0952963959 - - ATP binding protein, putative [Ricinus communis]
11 Hb_064885_010 0.0958176226 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_000061_060 0.0962499062 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
13 Hb_054165_010 0.0986886069 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_004924_020 0.102612086 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_128460_020 0.1080804399 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
16 Hb_136973_020 0.1113277345 - - -
17 Hb_001511_200 0.1164218543 - - Embryonic abundant protein, putative [Ricinus communis]
18 Hb_137349_010 0.1185114978 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
19 Hb_005773_010 0.1185451663 - - -
20 Hb_158110_010 0.1203838449 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]

Gene co-expression network

sample Hb_173029_010 Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_173029_010--Hb_000668_220 Hb_004241_190 Hb_004241_190 Hb_173029_010--Hb_004241_190 Hb_000628_050 Hb_000628_050 Hb_173029_010--Hb_000628_050 Hb_000373_220 Hb_000373_220 Hb_173029_010--Hb_000373_220 Hb_053935_010 Hb_053935_010 Hb_173029_010--Hb_053935_010 Hb_000904_110 Hb_000904_110 Hb_173029_010--Hb_000904_110 Hb_000668_220--Hb_004241_190 Hb_000668_220--Hb_000373_220 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200 Hb_000668_220--Hb_000628_050 Hb_004241_190--Hb_053935_010 Hb_000061_060 Hb_000061_060 Hb_004241_190--Hb_000061_060 Hb_004241_190--Hb_000373_220 Hb_004241_190--Hb_000628_050 Hb_128460_020 Hb_128460_020 Hb_004241_190--Hb_128460_020 Hb_005773_010 Hb_005773_010 Hb_000628_050--Hb_005773_010 Hb_000628_050--Hb_000061_060 Hb_000628_050--Hb_053935_010 Hb_000373_220--Hb_053935_010 Hb_000373_220--Hb_128460_020 Hb_000373_220--Hb_000061_060 Hb_014361_140 Hb_014361_140 Hb_000373_220--Hb_014361_140 Hb_053935_010--Hb_128460_020 Hb_053935_010--Hb_000061_060 Hb_053935_010--Hb_014361_140 Hb_158110_010 Hb_158110_010 Hb_053935_010--Hb_158110_010 Hb_116103_010 Hb_116103_010 Hb_000904_110--Hb_116103_010 Hb_064885_010 Hb_064885_010 Hb_000904_110--Hb_064885_010 Hb_004924_020 Hb_004924_020 Hb_000904_110--Hb_004924_020 Hb_002849_010 Hb_002849_010 Hb_000904_110--Hb_002849_010 Hb_000904_110--Hb_000668_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00961752 0.00864606 0.00908286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis