Hb_002849_010

Information

Type -
Description -
Location Contig2849: 8140-13163
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05270g
description hypothetical protein
nr
ID XP_012083834.1
description PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067K8H6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14351 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29818: 9367-9812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_010 0.0 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
2 Hb_116103_010 0.083659673 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
3 Hb_004314_020 0.0873461302 - - Auxin-responsive GH3 family protein [Theobroma cacao]
4 Hb_011028_040 0.0970448641 - - receptor serine/threonine kinase, putative [Ricinus communis]
5 Hb_000904_110 0.0971959337 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
6 Hb_064885_010 0.0983400624 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
7 Hb_000628_050 0.1031520098 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_136973_020 0.1048970914 - - -
9 Hb_000248_080 0.1109446834 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_005928_010 0.1114892791 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
11 Hb_160950_010 0.1119507751 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
12 Hb_009083_020 0.1127031653 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_001333_030 0.1182322225 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
14 Hb_005773_010 0.1206063011 - - -
15 Hb_173029_010 0.1223954094 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000170_260 0.1240776731 - - amino acid transporter, putative [Ricinus communis]
17 Hb_001002_020 0.1250079119 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000277_030 0.1295000309 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
19 Hb_002163_070 0.1300484838 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
20 Hb_004924_020 0.131878191 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002849_010 Hb_002849_010 Hb_116103_010 Hb_116103_010 Hb_002849_010--Hb_116103_010 Hb_004314_020 Hb_004314_020 Hb_002849_010--Hb_004314_020 Hb_011028_040 Hb_011028_040 Hb_002849_010--Hb_011028_040 Hb_000904_110 Hb_000904_110 Hb_002849_010--Hb_000904_110 Hb_064885_010 Hb_064885_010 Hb_002849_010--Hb_064885_010 Hb_000628_050 Hb_000628_050 Hb_002849_010--Hb_000628_050 Hb_116103_010--Hb_000904_110 Hb_116103_010--Hb_064885_010 Hb_004924_020 Hb_004924_020 Hb_116103_010--Hb_004924_020 Hb_173029_010 Hb_173029_010 Hb_116103_010--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_116103_010--Hb_000668_220 Hb_004314_020--Hb_011028_040 Hb_000170_260 Hb_000170_260 Hb_004314_020--Hb_000170_260 Hb_006873_010 Hb_006873_010 Hb_004314_020--Hb_006873_010 Hb_001032_080 Hb_001032_080 Hb_004314_020--Hb_001032_080 Hb_136973_020 Hb_136973_020 Hb_004314_020--Hb_136973_020 Hb_011028_040--Hb_006873_010 Hb_001333_030 Hb_001333_030 Hb_011028_040--Hb_001333_030 Hb_011028_040--Hb_116103_010 Hb_011028_040--Hb_000904_110 Hb_000904_110--Hb_064885_010 Hb_000904_110--Hb_173029_010 Hb_000904_110--Hb_004924_020 Hb_000904_110--Hb_000668_220 Hb_001002_020 Hb_001002_020 Hb_064885_010--Hb_001002_020 Hb_005928_010 Hb_005928_010 Hb_064885_010--Hb_005928_010 Hb_054165_010 Hb_054165_010 Hb_064885_010--Hb_054165_010 Hb_000277_030 Hb_000277_030 Hb_064885_010--Hb_000277_030 Hb_004241_190 Hb_004241_190 Hb_000628_050--Hb_004241_190 Hb_000628_050--Hb_173029_010 Hb_005773_010 Hb_005773_010 Hb_000628_050--Hb_005773_010 Hb_000061_060 Hb_000061_060 Hb_000628_050--Hb_000061_060 Hb_000628_050--Hb_000668_220 Hb_053935_010 Hb_053935_010 Hb_000628_050--Hb_053935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.56049 2.02513 2.32616 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0189108 0 0 0.0797933

CAGE analysis