Hb_011429_010

Information

Type -
Description -
Location Contig11429: 755-3883
Sequence    

Annotation

kegg
ID pop:POPTR_0188s00230g
description hypothetical protein
nr
ID XP_006388426.1
description hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DWI1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0188s00230g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011429_010 0.0 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
2 Hb_000769_030 0.0280996263 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_004724_290 0.0635904418 transcription factor TF Family: NAC -
4 Hb_098175_010 0.0861705123 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_128460_020 0.0892373602 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
6 Hb_010369_010 0.0913945457 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003602_080 0.0917144371 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
8 Hb_000373_220 0.0946873578 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_003674_010 0.0967059463 - - purine transporter, putative [Ricinus communis]
10 Hb_053935_010 0.0970615378 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
11 Hb_014361_140 0.0994162077 - - PREDICTED: peroxidase 51 [Jatropha curcas]
12 Hb_002422_020 0.1017784578 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
13 Hb_006916_220 0.1019131106 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
14 Hb_019978_010 0.1025666979 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
15 Hb_013591_010 0.1053841423 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
16 Hb_000203_090 0.1073377173 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
17 Hb_010012_020 0.1125197037 - - conserved hypothetical protein [Ricinus communis]
18 Hb_184752_010 0.1152687634 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
19 Hb_158110_010 0.1157801921 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
20 Hb_010573_030 0.1166035986 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011429_010 Hb_011429_010 Hb_000769_030 Hb_000769_030 Hb_011429_010--Hb_000769_030 Hb_004724_290 Hb_004724_290 Hb_011429_010--Hb_004724_290 Hb_098175_010 Hb_098175_010 Hb_011429_010--Hb_098175_010 Hb_128460_020 Hb_128460_020 Hb_011429_010--Hb_128460_020 Hb_010369_010 Hb_010369_010 Hb_011429_010--Hb_010369_010 Hb_003602_080 Hb_003602_080 Hb_011429_010--Hb_003602_080 Hb_000769_030--Hb_128460_020 Hb_014361_140 Hb_014361_140 Hb_000769_030--Hb_014361_140 Hb_053935_010 Hb_053935_010 Hb_000769_030--Hb_053935_010 Hb_000769_030--Hb_010369_010 Hb_000769_030--Hb_004724_290 Hb_019978_010 Hb_019978_010 Hb_004724_290--Hb_019978_010 Hb_002006_110 Hb_002006_110 Hb_004724_290--Hb_002006_110 Hb_006916_220 Hb_006916_220 Hb_004724_290--Hb_006916_220 Hb_010136_020 Hb_010136_020 Hb_004724_290--Hb_010136_020 Hb_184752_010 Hb_184752_010 Hb_004724_290--Hb_184752_010 Hb_172240_010 Hb_172240_010 Hb_098175_010--Hb_172240_010 Hb_003071_040 Hb_003071_040 Hb_098175_010--Hb_003071_040 Hb_098175_010--Hb_000769_030 Hb_010573_030 Hb_010573_030 Hb_098175_010--Hb_010573_030 Hb_098175_010--Hb_003602_080 Hb_128460_020--Hb_014361_140 Hb_128460_020--Hb_053935_010 Hb_000061_060 Hb_000061_060 Hb_128460_020--Hb_000061_060 Hb_000373_220 Hb_000373_220 Hb_128460_020--Hb_000373_220 Hb_004241_190 Hb_004241_190 Hb_128460_020--Hb_004241_190 Hb_158110_010 Hb_158110_010 Hb_128460_020--Hb_158110_010 Hb_010369_010--Hb_128460_020 Hb_010369_010--Hb_014361_140 Hb_010369_010--Hb_053935_010 Hb_010369_010--Hb_158110_010 Hb_010012_020 Hb_010012_020 Hb_003602_080--Hb_010012_020 Hb_003602_080--Hb_000769_030 Hb_039410_010 Hb_039410_010 Hb_003602_080--Hb_039410_010 Hb_165552_020 Hb_165552_020 Hb_003602_080--Hb_165552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.276551 0.0825069 0.199136 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis