Hb_000769_030

Information

Type -
Description -
Location Contig769: 37931-41398
Sequence    

Annotation

kegg
ID rcu:RCOM_0909020
description ankyrin repeat-containing protein, putative
nr
ID XP_002517018.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID P16157
description Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3
trembl
ID B9RTE9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0909020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57546: 38163-38424 , PASA_asmbl_57547: 38444-90768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000769_030 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_011429_010 0.0280996263 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
3 Hb_128460_020 0.0656811327 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
4 Hb_014361_140 0.0725953272 - - PREDICTED: peroxidase 51 [Jatropha curcas]
5 Hb_053935_010 0.078627012 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
6 Hb_010369_010 0.079508903 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004724_290 0.0800477256 transcription factor TF Family: NAC -
8 Hb_000373_220 0.0835591207 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_000203_090 0.0891866267 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
10 Hb_098175_010 0.0958012255 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
11 Hb_000061_060 0.0962711056 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
12 Hb_158110_010 0.0967131269 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
13 Hb_003602_080 0.1011572135 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
14 Hb_006916_220 0.1111517701 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
15 Hb_039410_010 0.1119940358 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_003674_010 0.1150420618 - - purine transporter, putative [Ricinus communis]
17 Hb_004241_190 0.1177859876 - - -
18 Hb_019978_010 0.1226293231 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
19 Hb_010012_020 0.1253809352 - - conserved hypothetical protein [Ricinus communis]
20 Hb_184752_010 0.1280649364 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]

Gene co-expression network

sample Hb_000769_030 Hb_000769_030 Hb_011429_010 Hb_011429_010 Hb_000769_030--Hb_011429_010 Hb_128460_020 Hb_128460_020 Hb_000769_030--Hb_128460_020 Hb_014361_140 Hb_014361_140 Hb_000769_030--Hb_014361_140 Hb_053935_010 Hb_053935_010 Hb_000769_030--Hb_053935_010 Hb_010369_010 Hb_010369_010 Hb_000769_030--Hb_010369_010 Hb_004724_290 Hb_004724_290 Hb_000769_030--Hb_004724_290 Hb_011429_010--Hb_004724_290 Hb_098175_010 Hb_098175_010 Hb_011429_010--Hb_098175_010 Hb_011429_010--Hb_128460_020 Hb_011429_010--Hb_010369_010 Hb_003602_080 Hb_003602_080 Hb_011429_010--Hb_003602_080 Hb_128460_020--Hb_014361_140 Hb_128460_020--Hb_053935_010 Hb_000061_060 Hb_000061_060 Hb_128460_020--Hb_000061_060 Hb_000373_220 Hb_000373_220 Hb_128460_020--Hb_000373_220 Hb_004241_190 Hb_004241_190 Hb_128460_020--Hb_004241_190 Hb_158110_010 Hb_158110_010 Hb_128460_020--Hb_158110_010 Hb_014361_140--Hb_000061_060 Hb_014361_140--Hb_053935_010 Hb_104855_010 Hb_104855_010 Hb_014361_140--Hb_104855_010 Hb_014361_140--Hb_158110_010 Hb_014361_140--Hb_004241_190 Hb_053935_010--Hb_000373_220 Hb_053935_010--Hb_004241_190 Hb_053935_010--Hb_000061_060 Hb_053935_010--Hb_158110_010 Hb_010369_010--Hb_128460_020 Hb_010369_010--Hb_014361_140 Hb_010369_010--Hb_053935_010 Hb_010369_010--Hb_158110_010 Hb_019978_010 Hb_019978_010 Hb_004724_290--Hb_019978_010 Hb_002006_110 Hb_002006_110 Hb_004724_290--Hb_002006_110 Hb_006916_220 Hb_006916_220 Hb_004724_290--Hb_006916_220 Hb_010136_020 Hb_010136_020 Hb_004724_290--Hb_010136_020 Hb_184752_010 Hb_184752_010 Hb_004724_290--Hb_184752_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.00368 2.69041 6.61056 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis