Hb_000086_600

Information

Type -
Description -
Location Contig86: 540003-540395
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_600 0.0 - - -
2 Hb_117602_010 0.0570094532 - - dimethylaniline monooxygenase, putative [Ricinus communis]
3 Hb_005618_020 0.0625638071 - - hypothetical protein RCOM_1342750 [Ricinus communis]
4 Hb_009707_010 0.0752279728 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
5 Hb_114932_010 0.0823708261 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_005843_080 0.0833452565 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_147137_020 0.0836132723 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
8 Hb_001565_050 0.0842148979 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
9 Hb_125201_010 0.0849722489 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
10 Hb_000338_020 0.0888627781 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
11 Hb_031862_150 0.0897834543 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_106810_010 0.0913615229 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_015978_040 0.0915878456 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
14 Hb_000904_090 0.0919109576 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
15 Hb_034132_010 0.0936302736 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
16 Hb_022768_010 0.0943671126 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
17 Hb_142691_010 0.0948434295 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
18 Hb_000227_410 0.0983312716 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
19 Hb_048538_010 0.0996754921 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
20 Hb_027506_060 0.1008773992 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000086_600 Hb_000086_600 Hb_117602_010 Hb_117602_010 Hb_000086_600--Hb_117602_010 Hb_005618_020 Hb_005618_020 Hb_000086_600--Hb_005618_020 Hb_009707_010 Hb_009707_010 Hb_000086_600--Hb_009707_010 Hb_114932_010 Hb_114932_010 Hb_000086_600--Hb_114932_010 Hb_005843_080 Hb_005843_080 Hb_000086_600--Hb_005843_080 Hb_147137_020 Hb_147137_020 Hb_000086_600--Hb_147137_020 Hb_001565_050 Hb_001565_050 Hb_117602_010--Hb_001565_050 Hb_117602_010--Hb_005843_080 Hb_189242_010 Hb_189242_010 Hb_117602_010--Hb_189242_010 Hb_034132_010 Hb_034132_010 Hb_117602_010--Hb_034132_010 Hb_142691_010 Hb_142691_010 Hb_117602_010--Hb_142691_010 Hb_106810_010 Hb_106810_010 Hb_005618_020--Hb_106810_010 Hb_125201_010 Hb_125201_010 Hb_005618_020--Hb_125201_010 Hb_004586_120 Hb_004586_120 Hb_005618_020--Hb_004586_120 Hb_005618_020--Hb_117602_010 Hb_000016_220 Hb_000016_220 Hb_005618_020--Hb_000016_220 Hb_009707_010--Hb_114932_010 Hb_009707_010--Hb_125201_010 Hb_000338_020 Hb_000338_020 Hb_009707_010--Hb_000338_020 Hb_000904_090 Hb_000904_090 Hb_009707_010--Hb_000904_090 Hb_009683_060 Hb_009683_060 Hb_009707_010--Hb_009683_060 Hb_114932_010--Hb_000338_020 Hb_114932_010--Hb_009683_060 Hb_114932_010--Hb_000904_090 Hb_167802_010 Hb_167802_010 Hb_114932_010--Hb_167802_010 Hb_005843_080--Hb_001565_050 Hb_015978_040 Hb_015978_040 Hb_005843_080--Hb_015978_040 Hb_005843_080--Hb_034132_010 Hb_005843_080--Hb_142691_010 Hb_008579_010 Hb_008579_010 Hb_147137_020--Hb_008579_010 Hb_002486_030 Hb_002486_030 Hb_147137_020--Hb_002486_030 Hb_147137_020--Hb_142691_010 Hb_073423_010 Hb_073423_010 Hb_147137_020--Hb_073423_010 Hb_104855_020 Hb_104855_020 Hb_147137_020--Hb_104855_020 Hb_031862_150 Hb_031862_150 Hb_147137_020--Hb_031862_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0869099 282.11 55.1978 35.1783 0.0820003 0.0793067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.161969 0 1.25366 0.848837

CAGE analysis