Hb_142691_010

Information

Type -
Description -
Location Contig142691: 2163-2585
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05100g
description POPTRDRAFT_661732; hypothetical protein
nr
ID XP_012093036.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID B9I2K2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05100g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142691_010 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
2 Hb_008579_010 0.0127748437 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
3 Hb_002486_030 0.0202082817 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
4 Hb_012691_040 0.0223908064 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
5 Hb_073423_010 0.0262159707 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001514_110 0.0449784517 - - conserved hypothetical protein [Ricinus communis]
7 Hb_104855_020 0.0527792824 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_004117_360 0.0536475411 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
9 Hb_143232_020 0.0553355059 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
10 Hb_147137_020 0.0626691785 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
11 Hb_001565_050 0.0652160494 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
12 Hb_005725_180 0.0740855373 - - -
13 Hb_117602_010 0.087348375 - - dimethylaniline monooxygenase, putative [Ricinus communis]
14 Hb_011111_010 0.087383955 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
15 Hb_015978_040 0.0893836378 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
16 Hb_111908_010 0.0910379423 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_031862_150 0.0911718672 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_009683_060 0.0917241045 - - -
19 Hb_000086_600 0.0948434295 - - -
20 Hb_001623_020 0.0958458652 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_142691_010 Hb_142691_010 Hb_008579_010 Hb_008579_010 Hb_142691_010--Hb_008579_010 Hb_002486_030 Hb_002486_030 Hb_142691_010--Hb_002486_030 Hb_012691_040 Hb_012691_040 Hb_142691_010--Hb_012691_040 Hb_073423_010 Hb_073423_010 Hb_142691_010--Hb_073423_010 Hb_001514_110 Hb_001514_110 Hb_142691_010--Hb_001514_110 Hb_104855_020 Hb_104855_020 Hb_142691_010--Hb_104855_020 Hb_008579_010--Hb_002486_030 Hb_008579_010--Hb_073423_010 Hb_008579_010--Hb_012691_040 Hb_143232_020 Hb_143232_020 Hb_008579_010--Hb_143232_020 Hb_008579_010--Hb_104855_020 Hb_002486_030--Hb_073423_010 Hb_002486_030--Hb_012691_040 Hb_002486_030--Hb_143232_020 Hb_002486_030--Hb_104855_020 Hb_012691_040--Hb_001514_110 Hb_012691_040--Hb_073423_010 Hb_004117_360 Hb_004117_360 Hb_012691_040--Hb_004117_360 Hb_073423_010--Hb_143232_020 Hb_073423_010--Hb_004117_360 Hb_001514_110--Hb_004117_360 Hb_005725_180 Hb_005725_180 Hb_001514_110--Hb_005725_180 Hb_001514_110--Hb_073423_010 Hb_001514_110--Hb_002486_030 Hb_009683_060 Hb_009683_060 Hb_104855_020--Hb_009683_060 Hb_104855_020--Hb_143232_020 Hb_001623_020 Hb_001623_020 Hb_104855_020--Hb_001623_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.5151 0.186639 0.126414 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis