Hb_002486_030

Information

Type -
Description -
Location Contig2486: 32881-35957
Sequence    

Annotation

kegg
ID tcc:TCM_041289
description Coiled-coil domain-containing protein 55, putative isoform 1
nr
ID XP_012075050.1
description PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
swissprot
ID Q568R1
description Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2
trembl
ID A0A067KH73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_030 0.0 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
2 Hb_008579_010 0.0084084673 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
3 Hb_073423_010 0.0094783913 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_142691_010 0.0202082817 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
5 Hb_012691_040 0.0304618703 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
6 Hb_143232_020 0.0353318758 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
7 Hb_104855_020 0.0461010925 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_004117_360 0.0483745967 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
9 Hb_001514_110 0.0484868192 - - conserved hypothetical protein [Ricinus communis]
10 Hb_147137_020 0.0624899457 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
11 Hb_011111_010 0.0683106971 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
12 Hb_001565_050 0.0773281668 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
13 Hb_001623_020 0.0802486709 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
14 Hb_005725_180 0.0843585909 - - -
15 Hb_111908_010 0.0881488945 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_009683_060 0.0882016194 - - -
17 Hb_031862_150 0.0943950618 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_189242_010 0.0944687737 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
19 Hb_117602_010 0.0992140948 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_000904_090 0.1014465189 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_002486_030 Hb_002486_030 Hb_008579_010 Hb_008579_010 Hb_002486_030--Hb_008579_010 Hb_073423_010 Hb_073423_010 Hb_002486_030--Hb_073423_010 Hb_142691_010 Hb_142691_010 Hb_002486_030--Hb_142691_010 Hb_012691_040 Hb_012691_040 Hb_002486_030--Hb_012691_040 Hb_143232_020 Hb_143232_020 Hb_002486_030--Hb_143232_020 Hb_104855_020 Hb_104855_020 Hb_002486_030--Hb_104855_020 Hb_008579_010--Hb_142691_010 Hb_008579_010--Hb_073423_010 Hb_008579_010--Hb_012691_040 Hb_008579_010--Hb_143232_020 Hb_008579_010--Hb_104855_020 Hb_073423_010--Hb_142691_010 Hb_073423_010--Hb_012691_040 Hb_073423_010--Hb_143232_020 Hb_004117_360 Hb_004117_360 Hb_073423_010--Hb_004117_360 Hb_142691_010--Hb_012691_040 Hb_001514_110 Hb_001514_110 Hb_142691_010--Hb_001514_110 Hb_142691_010--Hb_104855_020 Hb_012691_040--Hb_001514_110 Hb_012691_040--Hb_004117_360 Hb_011111_010 Hb_011111_010 Hb_143232_020--Hb_011111_010 Hb_143232_020--Hb_104855_020 Hb_001623_020 Hb_001623_020 Hb_143232_020--Hb_001623_020 Hb_009683_060 Hb_009683_060 Hb_104855_020--Hb_009683_060 Hb_104855_020--Hb_001623_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.06589 0.32121 0.257142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis