Hb_004117_360

Information

Type -
Description -
Location Contig4117: 247257-247526
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14160g
description POPTRDRAFT_577154; hypothetical protein
nr
ID KDP22780.1
description hypothetical protein JCGZ_00367 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00367 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_360 0.0 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
2 Hb_001514_110 0.0284752606 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012691_040 0.0375611148 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
4 Hb_073423_010 0.0408569825 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002486_030 0.0483745967 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
6 Hb_008579_010 0.0522984822 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
7 Hb_142691_010 0.0536475411 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
8 Hb_111908_010 0.0548180765 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005725_180 0.0615382744 - - -
10 Hb_143232_020 0.0616972957 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
11 Hb_011111_010 0.067486555 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
12 Hb_005843_070 0.0800260012 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
13 Hb_001565_050 0.081968406 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
14 Hb_147137_020 0.0829534838 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
15 Hb_004157_080 0.083187907 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
16 Hb_104855_020 0.0917202449 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_189242_010 0.0938731888 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
18 Hb_044026_010 0.0961659338 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
19 Hb_110048_010 0.0965246958 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
20 Hb_005946_190 0.0967430264 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004117_360 Hb_004117_360 Hb_001514_110 Hb_001514_110 Hb_004117_360--Hb_001514_110 Hb_012691_040 Hb_012691_040 Hb_004117_360--Hb_012691_040 Hb_073423_010 Hb_073423_010 Hb_004117_360--Hb_073423_010 Hb_002486_030 Hb_002486_030 Hb_004117_360--Hb_002486_030 Hb_008579_010 Hb_008579_010 Hb_004117_360--Hb_008579_010 Hb_142691_010 Hb_142691_010 Hb_004117_360--Hb_142691_010 Hb_001514_110--Hb_012691_040 Hb_005725_180 Hb_005725_180 Hb_001514_110--Hb_005725_180 Hb_001514_110--Hb_073423_010 Hb_001514_110--Hb_142691_010 Hb_001514_110--Hb_002486_030 Hb_012691_040--Hb_142691_010 Hb_012691_040--Hb_008579_010 Hb_012691_040--Hb_073423_010 Hb_012691_040--Hb_002486_030 Hb_073423_010--Hb_002486_030 Hb_073423_010--Hb_008579_010 Hb_073423_010--Hb_142691_010 Hb_143232_020 Hb_143232_020 Hb_073423_010--Hb_143232_020 Hb_002486_030--Hb_008579_010 Hb_002486_030--Hb_142691_010 Hb_002486_030--Hb_143232_020 Hb_104855_020 Hb_104855_020 Hb_002486_030--Hb_104855_020 Hb_008579_010--Hb_142691_010 Hb_008579_010--Hb_143232_020 Hb_008579_010--Hb_104855_020 Hb_142691_010--Hb_104855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 226.677 22.1735 12.1118 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.183394 0

CAGE analysis