Hb_189242_010

Information

Type -
Description -
Location Contig189242: 799-2028
Sequence    

Annotation

kegg
ID tcc:TCM_021586
description NAD(P)-linked oxidoreductase superfamily protein
nr
ID KJB78572.1
description hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
swissprot
ID P23901
description Aldose reductase OS=Hordeum vulgare PE=1 SV=1
trembl
ID A0A0D2S661
description Gossypium raimondii chromosome 13, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_013G0075002 PE=4 SV=1
Gene Ontology
ID GO:0047134
description aldose reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189242_010 0.0 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
2 Hb_117602_010 0.0792648175 - - dimethylaniline monooxygenase, putative [Ricinus communis]
3 Hb_089140_020 0.0802710611 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_004117_360 0.0938731888 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
5 Hb_002486_030 0.0944687737 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
6 Hb_073423_010 0.0946412999 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_008579_010 0.0949852827 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
8 Hb_142691_010 0.0967004025 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
9 Hb_147137_020 0.097796099 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
10 Hb_012691_040 0.0986269518 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
11 Hb_143232_020 0.1007740669 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
12 Hb_001565_050 0.1039432079 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
13 Hb_001514_110 0.1048660603 - - conserved hypothetical protein [Ricinus communis]
14 Hb_104855_020 0.1063280344 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_031862_150 0.1073965139 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
16 Hb_011111_010 0.1154992172 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
17 Hb_004157_080 0.1162962508 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
18 Hb_055706_010 0.1179524195 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
19 Hb_027214_060 0.1180028483 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_000227_410 0.1184817773 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_189242_010 Hb_189242_010 Hb_117602_010 Hb_117602_010 Hb_189242_010--Hb_117602_010 Hb_089140_020 Hb_089140_020 Hb_189242_010--Hb_089140_020 Hb_004117_360 Hb_004117_360 Hb_189242_010--Hb_004117_360 Hb_002486_030 Hb_002486_030 Hb_189242_010--Hb_002486_030 Hb_073423_010 Hb_073423_010 Hb_189242_010--Hb_073423_010 Hb_008579_010 Hb_008579_010 Hb_189242_010--Hb_008579_010 Hb_000086_600 Hb_000086_600 Hb_117602_010--Hb_000086_600 Hb_001565_050 Hb_001565_050 Hb_117602_010--Hb_001565_050 Hb_005843_080 Hb_005843_080 Hb_117602_010--Hb_005843_080 Hb_034132_010 Hb_034132_010 Hb_117602_010--Hb_034132_010 Hb_142691_010 Hb_142691_010 Hb_117602_010--Hb_142691_010 Hb_001168_100 Hb_001168_100 Hb_089140_020--Hb_001168_100 Hb_055706_010 Hb_055706_010 Hb_089140_020--Hb_055706_010 Hb_007383_050 Hb_007383_050 Hb_089140_020--Hb_007383_050 Hb_004267_070 Hb_004267_070 Hb_089140_020--Hb_004267_070 Hb_001411_150 Hb_001411_150 Hb_089140_020--Hb_001411_150 Hb_001514_110 Hb_001514_110 Hb_004117_360--Hb_001514_110 Hb_012691_040 Hb_012691_040 Hb_004117_360--Hb_012691_040 Hb_004117_360--Hb_073423_010 Hb_004117_360--Hb_002486_030 Hb_004117_360--Hb_008579_010 Hb_004117_360--Hb_142691_010 Hb_002486_030--Hb_008579_010 Hb_002486_030--Hb_073423_010 Hb_002486_030--Hb_142691_010 Hb_002486_030--Hb_012691_040 Hb_143232_020 Hb_143232_020 Hb_002486_030--Hb_143232_020 Hb_104855_020 Hb_104855_020 Hb_002486_030--Hb_104855_020 Hb_073423_010--Hb_008579_010 Hb_073423_010--Hb_142691_010 Hb_073423_010--Hb_012691_040 Hb_073423_010--Hb_143232_020 Hb_008579_010--Hb_142691_010 Hb_008579_010--Hb_012691_040 Hb_008579_010--Hb_143232_020 Hb_008579_010--Hb_104855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.76318 0.599279 0.469545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123207 0

CAGE analysis