Hb_089140_020

Information

Type -
Description -
Location Contig89140: 19279-21125
Sequence    

Annotation

kegg
ID rcu:RCOM_0711760
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002516271.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9CAH1
description Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1
trembl
ID B9RRA2
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0711760 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase at5g01020-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61659: 19373-19772 , PASA_asmbl_61660: 20208-20925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_020 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_189242_010 0.0802710611 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
3 Hb_001168_100 0.0864139939 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
4 Hb_055706_010 0.0923538776 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
5 Hb_007383_050 0.0982085001 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
6 Hb_004267_070 0.100315396 - - latex allene oxide synthase [Hevea brasiliensis]
7 Hb_001411_150 0.1036947869 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
8 Hb_027913_010 0.106207816 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000347_370 0.1133780426 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
10 Hb_001437_200 0.1188137856 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
11 Hb_035391_010 0.1209490176 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_027214_060 0.1246219939 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
13 Hb_002205_260 0.1251840892 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
14 Hb_005882_020 0.1259781391 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_117602_010 0.1266611674 - - dimethylaniline monooxygenase, putative [Ricinus communis]
16 Hb_005588_010 0.1279357734 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
17 Hb_022630_010 0.1310877565 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_025477_020 0.1316754272 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
19 Hb_000210_150 0.131809853 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_000227_410 0.1342091921 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_089140_020 Hb_089140_020 Hb_189242_010 Hb_189242_010 Hb_089140_020--Hb_189242_010 Hb_001168_100 Hb_001168_100 Hb_089140_020--Hb_001168_100 Hb_055706_010 Hb_055706_010 Hb_089140_020--Hb_055706_010 Hb_007383_050 Hb_007383_050 Hb_089140_020--Hb_007383_050 Hb_004267_070 Hb_004267_070 Hb_089140_020--Hb_004267_070 Hb_001411_150 Hb_001411_150 Hb_089140_020--Hb_001411_150 Hb_117602_010 Hb_117602_010 Hb_189242_010--Hb_117602_010 Hb_004117_360 Hb_004117_360 Hb_189242_010--Hb_004117_360 Hb_002486_030 Hb_002486_030 Hb_189242_010--Hb_002486_030 Hb_073423_010 Hb_073423_010 Hb_189242_010--Hb_073423_010 Hb_008579_010 Hb_008579_010 Hb_189242_010--Hb_008579_010 Hb_000347_370 Hb_000347_370 Hb_001168_100--Hb_000347_370 Hb_001168_100--Hb_004267_070 Hb_001168_100--Hb_007383_050 Hb_001168_100--Hb_001411_150 Hb_002475_110 Hb_002475_110 Hb_001168_100--Hb_002475_110 Hb_005882_020 Hb_005882_020 Hb_055706_010--Hb_005882_020 Hb_035391_010 Hb_035391_010 Hb_055706_010--Hb_035391_010 Hb_000522_120 Hb_000522_120 Hb_055706_010--Hb_000522_120 Hb_055706_010--Hb_189242_010 Hb_048653_040 Hb_048653_040 Hb_055706_010--Hb_048653_040 Hb_007383_050--Hb_001411_150 Hb_009189_010 Hb_009189_010 Hb_007383_050--Hb_009189_010 Hb_007383_050--Hb_004267_070 Hb_007383_050--Hb_000347_370 Hb_004267_070--Hb_000347_370 Hb_004267_070--Hb_001411_150 Hb_000210_150 Hb_000210_150 Hb_004267_070--Hb_000210_150 Hb_001411_150--Hb_009189_010 Hb_001289_030 Hb_001289_030 Hb_001411_150--Hb_001289_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 29.3466 2.83866 3.04657 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.59098 0.112168

CAGE analysis