Hb_001289_030

Information

Type -
Description -
Location Contig1289: 71271-71942
Sequence    

Annotation

kegg
ID rcu:RCOM_0437400
description syntaxin, plant, putative
nr
ID XP_002532540.1
description syntaxin, plant, putative [Ricinus communis]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID B9T2S1
description Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_M13.ab1: 71357-72007

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_030 0.0 - - syntaxin, plant, putative [Ricinus communis]
2 Hb_009683_010 0.0713190095 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_001411_150 0.0906657372 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
4 Hb_003582_020 0.0912262469 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
5 Hb_009189_010 0.093492324 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
6 Hb_025477_020 0.0984011684 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
7 Hb_007383_050 0.101012171 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
8 Hb_002922_010 0.1078858134 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
9 Hb_005618_020 0.1109897297 - - hypothetical protein RCOM_1342750 [Ricinus communis]
10 Hb_002660_090 0.1111796381 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
11 Hb_001477_080 0.1127584034 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
12 Hb_002205_260 0.116212274 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
13 Hb_004586_120 0.1176696824 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
14 Hb_073870_020 0.1186765629 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
15 Hb_019654_010 0.1206696823 - - multicopper oxidase, putative [Ricinus communis]
16 Hb_000347_360 0.1209699536 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
17 Hb_000571_030 0.1215222897 - - ammonium transporter, putative [Ricinus communis]
18 Hb_000086_600 0.1272141187 - - -
19 Hb_125201_010 0.1290785424 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
20 Hb_004267_070 0.1296183938 - - latex allene oxide synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001289_030 Hb_001289_030 Hb_009683_010 Hb_009683_010 Hb_001289_030--Hb_009683_010 Hb_001411_150 Hb_001411_150 Hb_001289_030--Hb_001411_150 Hb_003582_020 Hb_003582_020 Hb_001289_030--Hb_003582_020 Hb_009189_010 Hb_009189_010 Hb_001289_030--Hb_009189_010 Hb_025477_020 Hb_025477_020 Hb_001289_030--Hb_025477_020 Hb_007383_050 Hb_007383_050 Hb_001289_030--Hb_007383_050 Hb_012545_080 Hb_012545_080 Hb_009683_010--Hb_012545_080 Hb_007407_010 Hb_007407_010 Hb_009683_010--Hb_007407_010 Hb_001568_120 Hb_001568_120 Hb_009683_010--Hb_001568_120 Hb_009683_010--Hb_003582_020 Hb_009683_010--Hb_001411_150 Hb_001411_150--Hb_007383_050 Hb_001411_150--Hb_009189_010 Hb_004267_070 Hb_004267_070 Hb_001411_150--Hb_004267_070 Hb_001168_100 Hb_001168_100 Hb_001411_150--Hb_001168_100 Hb_089140_020 Hb_089140_020 Hb_001411_150--Hb_089140_020 Hb_003582_020--Hb_025477_020 Hb_002922_010 Hb_002922_010 Hb_003582_020--Hb_002922_010 Hb_035391_010 Hb_035391_010 Hb_003582_020--Hb_035391_010 Hb_136027_010 Hb_136027_010 Hb_003582_020--Hb_136027_010 Hb_003582_020--Hb_001411_150 Hb_073870_020 Hb_073870_020 Hb_009189_010--Hb_073870_020 Hb_009189_010--Hb_007383_050 Hb_002849_030 Hb_002849_030 Hb_009189_010--Hb_002849_030 Hb_000347_360 Hb_000347_360 Hb_009189_010--Hb_000347_360 Hb_025477_020--Hb_002922_010 Hb_000210_150 Hb_000210_150 Hb_025477_020--Hb_000210_150 Hb_009707_010 Hb_009707_010 Hb_025477_020--Hb_009707_010 Hb_001477_080 Hb_001477_080 Hb_025477_020--Hb_001477_080 Hb_007383_050--Hb_001168_100 Hb_007383_050--Hb_004267_070 Hb_000347_370 Hb_000347_370 Hb_007383_050--Hb_000347_370 Hb_007383_050--Hb_089140_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0468019 470.018 108.855 81.9025 0 0.132898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.514045 1.1449 0 23.8565 7.42022

CAGE analysis