Hb_073870_020

Information

Type -
Description -
Location Contig73870: 2379-3062
Sequence    

Annotation

kegg
ID vvi:104882348
description uncharacterized protein At1g18380-like
nr
ID XP_012075463.1
description PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
swissprot
ID Q5BQ05
description Uncharacterized protein At1g18380 OS=Arabidopsis thaliana GN=At1g18380 PE=2 SV=1
trembl
ID A0A061FUZ9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_012401 PE=4 SV=1
Gene Ontology
ID GO:0009987
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073870_020 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
2 Hb_000347_360 0.0611048067 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
3 Hb_002849_030 0.0734313371 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
4 Hb_027214_060 0.0765793506 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
5 Hb_009189_010 0.0778455932 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
6 Hb_000227_410 0.0802552506 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
7 Hb_048538_010 0.0946932435 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
8 Hb_010417_120 0.0980155618 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000322_020 0.1027224182 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
10 Hb_031862_150 0.1029048365 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
11 Hb_025477_020 0.1048780205 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
12 Hb_001411_150 0.1060493364 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
13 Hb_001477_080 0.1077260437 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
14 Hb_004586_120 0.1097697815 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_000904_090 0.1102559901 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
16 Hb_007328_010 0.1120739784 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
17 Hb_000016_220 0.1132357443 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
18 Hb_005618_020 0.1144302104 - - hypothetical protein RCOM_1342750 [Ricinus communis]
19 Hb_000210_150 0.1149389761 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_001511_270 0.1163090793 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]

Gene co-expression network

sample Hb_073870_020 Hb_073870_020 Hb_000347_360 Hb_000347_360 Hb_073870_020--Hb_000347_360 Hb_002849_030 Hb_002849_030 Hb_073870_020--Hb_002849_030 Hb_027214_060 Hb_027214_060 Hb_073870_020--Hb_027214_060 Hb_009189_010 Hb_009189_010 Hb_073870_020--Hb_009189_010 Hb_000227_410 Hb_000227_410 Hb_073870_020--Hb_000227_410 Hb_048538_010 Hb_048538_010 Hb_073870_020--Hb_048538_010 Hb_000347_360--Hb_048538_010 Hb_000347_360--Hb_000227_410 Hb_000347_360--Hb_002849_030 Hb_000322_020 Hb_000322_020 Hb_000347_360--Hb_000322_020 Hb_000347_360--Hb_027214_060 Hb_002849_030--Hb_000322_020 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_002849_030--Hb_048538_010 Hb_027214_060--Hb_000227_410 Hb_002475_110 Hb_002475_110 Hb_027214_060--Hb_002475_110 Hb_147137_020 Hb_147137_020 Hb_027214_060--Hb_147137_020 Hb_000904_090 Hb_000904_090 Hb_027214_060--Hb_000904_090 Hb_001411_150 Hb_001411_150 Hb_009189_010--Hb_001411_150 Hb_007383_050 Hb_007383_050 Hb_009189_010--Hb_007383_050 Hb_009189_010--Hb_000347_360 Hb_001289_030 Hb_001289_030 Hb_009189_010--Hb_001289_030 Hb_000227_410--Hb_000904_090 Hb_000227_410--Hb_002475_110 Hb_031862_150 Hb_031862_150 Hb_000227_410--Hb_031862_150 Hb_000227_410--Hb_048538_010 Hb_048538_010--Hb_031862_150 Hb_048538_010--Hb_000904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0361592 28.5908 3.86285 4.19232 0 0.0481658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167126 0.0656897 0 0.401327 0.90679

CAGE analysis