Hb_002849_030

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2849: 24188-26052
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09190g
description POPTRDRAFT_834779; hypothetical protein
nr
ID XP_002320852.2
description hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
swissprot
ID Q9SKD9
description Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1
trembl
ID B9I8V9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_030 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
2 Hb_000347_360 0.0733870117 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
3 Hb_073870_020 0.0734313371 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
4 Hb_000322_020 0.0787909784 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
5 Hb_009189_010 0.0876324818 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
6 Hb_000422_050 0.0896059523 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
7 Hb_048538_010 0.0933662747 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
8 Hb_000016_220 0.096626701 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
9 Hb_004586_120 0.0974276706 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
10 Hb_007328_010 0.1049840279 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
11 Hb_001511_270 0.1058768364 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
12 Hb_113396_020 0.1081844857 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
13 Hb_005618_020 0.1092793738 - - hypothetical protein RCOM_1342750 [Ricinus communis]
14 Hb_000227_410 0.1127176083 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
15 Hb_031862_150 0.1143650525 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
16 Hb_001477_080 0.1148506453 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
17 Hb_011287_020 0.1172909629 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000522_120 0.1194693929 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
19 Hb_141990_050 0.1206303456 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
20 Hb_009476_010 0.1212410067 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_030 Hb_002849_030 Hb_000347_360 Hb_000347_360 Hb_002849_030--Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_002849_030--Hb_073870_020 Hb_000322_020 Hb_000322_020 Hb_002849_030--Hb_000322_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_048538_010 Hb_048538_010 Hb_002849_030--Hb_048538_010 Hb_000347_360--Hb_073870_020 Hb_000347_360--Hb_048538_010 Hb_000227_410 Hb_000227_410 Hb_000347_360--Hb_000227_410 Hb_000347_360--Hb_000322_020 Hb_027214_060 Hb_027214_060 Hb_000347_360--Hb_027214_060 Hb_073870_020--Hb_027214_060 Hb_073870_020--Hb_009189_010 Hb_073870_020--Hb_000227_410 Hb_073870_020--Hb_048538_010 Hb_004586_120 Hb_004586_120 Hb_000322_020--Hb_004586_120 Hb_000322_020--Hb_000422_050 Hb_001257_040 Hb_001257_040 Hb_000322_020--Hb_001257_040 Hb_000529_050 Hb_000529_050 Hb_000322_020--Hb_000529_050 Hb_001411_150 Hb_001411_150 Hb_009189_010--Hb_001411_150 Hb_007383_050 Hb_007383_050 Hb_009189_010--Hb_007383_050 Hb_009189_010--Hb_000347_360 Hb_001289_030 Hb_001289_030 Hb_009189_010--Hb_001289_030 Hb_000422_050--Hb_001257_040 Hb_000422_050--Hb_004586_120 Hb_000127_220 Hb_000127_220 Hb_000422_050--Hb_000127_220 Hb_012496_010 Hb_012496_010 Hb_000422_050--Hb_012496_010 Hb_031862_150 Hb_031862_150 Hb_048538_010--Hb_031862_150 Hb_048538_010--Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_048538_010--Hb_000904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37232 283.376 49.3638 38.0539 0.148665 0.103759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.52114 0.30744 0.823623 3.1645 14.5156

CAGE analysis