Hb_012496_010

Information

Type -
Description -
Location Contig12496: 1348-11019
Sequence    

Annotation

kegg
ID rcu:RCOM_0574920
description kinase, putative (EC:2.7.10.1)
nr
ID XP_002529764.1
description kinase, putative [Ricinus communis]
swissprot
ID Q54PB4
description Probable myosin light chain kinase DDB_G0284661 OS=Dictyostelium discoideum GN=DDB_G0284661 PE=3 SV=1
trembl
ID B9SUU5
description Kinase, putative OS=Ricinus communis GN=RCOM_0574920 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012496_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_035677_010 0.0742845999 - - conserved hypothetical protein [Ricinus communis]
3 Hb_113396_020 0.0781914935 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
4 Hb_000836_310 0.0918879806 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
5 Hb_000127_220 0.0961680086 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
6 Hb_006907_020 0.1039702527 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
7 Hb_000422_050 0.104257776 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
8 Hb_097007_020 0.1077953384 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
9 Hb_001004_010 0.1140311196 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006873_030 0.1155970236 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_000247_150 0.116160505 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
12 Hb_000571_030 0.1177526489 - - ammonium transporter, putative [Ricinus communis]
13 Hb_000340_060 0.1260466204 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002849_030 0.1305393197 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
15 Hb_001257_040 0.1311633576 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
16 Hb_008143_020 0.1320735613 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
17 Hb_029664_010 0.1326224731 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000322_020 0.1356501772 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
19 Hb_039650_030 0.1357679093 - - hypothetical protein RCOM_2128750 [Ricinus communis]
20 Hb_004586_120 0.1363701793 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_012496_010 Hb_012496_010 Hb_035677_010 Hb_035677_010 Hb_012496_010--Hb_035677_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050 Hb_000247_150 Hb_000247_150 Hb_035677_010--Hb_000247_150 Hb_097007_020 Hb_097007_020 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_013720_010 Hb_013720_010 Hb_035677_010--Hb_013720_010 Hb_004899_360 Hb_004899_360 Hb_035677_010--Hb_004899_360 Hb_048538_010 Hb_048538_010 Hb_113396_020--Hb_048538_010 Hb_002849_030 Hb_002849_030 Hb_113396_020--Hb_002849_030 Hb_113396_020--Hb_000422_050 Hb_008897_020 Hb_008897_020 Hb_113396_020--Hb_008897_020 Hb_113396_020--Hb_000127_220 Hb_000836_310--Hb_000127_220 Hb_004032_220 Hb_004032_220 Hb_000836_310--Hb_004032_220 Hb_106810_010 Hb_106810_010 Hb_000836_310--Hb_106810_010 Hb_000340_060 Hb_000340_060 Hb_000836_310--Hb_000340_060 Hb_000032_150 Hb_000032_150 Hb_000836_310--Hb_000032_150 Hb_000127_220--Hb_000422_050 Hb_000127_220--Hb_000340_060 Hb_000127_220--Hb_004032_220 Hb_001257_040 Hb_001257_040 Hb_000127_220--Hb_001257_040 Hb_006907_020--Hb_097007_020 Hb_029664_010 Hb_029664_010 Hb_006907_020--Hb_029664_010 Hb_006907_020--Hb_035677_010 Hb_001004_010 Hb_001004_010 Hb_006907_020--Hb_001004_010 Hb_006907_020--Hb_004899_360 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_000422_050--Hb_002849_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.74016 2.13905 0.817313 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0360904 0.689647

CAGE analysis