Hb_113396_020

Information

Type -
Description -
Location Contig113396: 7566-8989
Sequence    

Annotation

kegg
ID gmx:100820552
description mitogen-activated protein kinase kinase kinase 1-like
nr
ID KHN39171.1
description Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A0B2RXK3
description Mitogen-activated protein kinase kinase kinase 1 OS=Glycine soja GN=glysoja_027976 PE=4 SV=1
Gene Ontology
ID GO:0016301
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113396_020 0.0 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
2 Hb_012496_010 0.0781914935 - - kinase, putative [Ricinus communis]
3 Hb_048538_010 0.0967582834 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
4 Hb_002849_030 0.1081844857 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
5 Hb_000422_050 0.1092346131 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
6 Hb_008897_020 0.1129920468 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
7 Hb_000127_220 0.1171020537 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
8 Hb_000347_360 0.1179825516 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
9 Hb_000322_020 0.118208494 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
10 Hb_001004_010 0.1183582327 - - conserved hypothetical protein [Ricinus communis]
11 Hb_035677_010 0.1207454576 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000836_310 0.1285274546 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
13 Hb_006873_030 0.1295805374 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_004586_120 0.1314602312 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_007328_010 0.1326720183 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
16 Hb_031862_150 0.1422750563 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_073870_020 0.144556673 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
18 Hb_000247_150 0.1460966762 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
19 Hb_001257_040 0.1475788545 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
20 Hb_022768_010 0.1502184794 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]

Gene co-expression network

sample Hb_113396_020 Hb_113396_020 Hb_012496_010 Hb_012496_010 Hb_113396_020--Hb_012496_010 Hb_048538_010 Hb_048538_010 Hb_113396_020--Hb_048538_010 Hb_002849_030 Hb_002849_030 Hb_113396_020--Hb_002849_030 Hb_000422_050 Hb_000422_050 Hb_113396_020--Hb_000422_050 Hb_008897_020 Hb_008897_020 Hb_113396_020--Hb_008897_020 Hb_000127_220 Hb_000127_220 Hb_113396_020--Hb_000127_220 Hb_035677_010 Hb_035677_010 Hb_012496_010--Hb_035677_010 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_012496_010--Hb_000127_220 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_012496_010--Hb_000422_050 Hb_000347_360 Hb_000347_360 Hb_048538_010--Hb_000347_360 Hb_031862_150 Hb_031862_150 Hb_048538_010--Hb_031862_150 Hb_000227_410 Hb_000227_410 Hb_048538_010--Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_048538_010--Hb_000904_090 Hb_048538_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_048538_010--Hb_073870_020 Hb_002849_030--Hb_000347_360 Hb_002849_030--Hb_073870_020 Hb_000322_020 Hb_000322_020 Hb_002849_030--Hb_000322_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_002849_030--Hb_000422_050 Hb_000422_050--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_000422_050--Hb_000127_220 Hb_091913_010 Hb_091913_010 Hb_008897_020--Hb_091913_010 Hb_007328_010 Hb_007328_010 Hb_008897_020--Hb_007328_010 Hb_000563_380 Hb_000563_380 Hb_008897_020--Hb_000563_380 Hb_008897_020--Hb_048538_010 Hb_045414_010 Hb_045414_010 Hb_008897_020--Hb_045414_010 Hb_000127_220--Hb_000836_310 Hb_000340_060 Hb_000340_060 Hb_000127_220--Hb_000340_060 Hb_004032_220 Hb_004032_220 Hb_000127_220--Hb_004032_220 Hb_000127_220--Hb_001257_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.43117 0.300001 0.165404 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.125338

CAGE analysis