Hb_007328_010

Information

Type -
Description -
Location Contig7328: 5418-9206
Sequence    

Annotation

kegg
ID fve:101299142
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID XP_004308937.2
description PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56143: 8011-8276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007328_010 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
2 Hb_141990_050 0.0813470364 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
3 Hb_009189_010 0.0978861989 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
4 Hb_000522_120 0.0985996973 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
5 Hb_001677_130 0.1021464035 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
6 Hb_002849_030 0.1049840279 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
7 Hb_073870_020 0.1120739784 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
8 Hb_005588_010 0.1162643747 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
9 Hb_008897_020 0.1179458139 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
10 Hb_000347_360 0.1182191871 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
11 Hb_031862_150 0.1226932081 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_091913_010 0.1240403922 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_000398_200 0.1270954022 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
14 Hb_048538_010 0.1274872696 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
15 Hb_039650_030 0.1308742344 - - hypothetical protein RCOM_2128750 [Ricinus communis]
16 Hb_113396_020 0.1326720183 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
17 Hb_000117_110 0.1343942 - - transferase, putative [Ricinus communis]
18 Hb_001411_150 0.1361044011 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
19 Hb_000175_250 0.1395899354 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
20 Hb_027214_060 0.1403380135 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007328_010 Hb_007328_010 Hb_141990_050 Hb_141990_050 Hb_007328_010--Hb_141990_050 Hb_009189_010 Hb_009189_010 Hb_007328_010--Hb_009189_010 Hb_000522_120 Hb_000522_120 Hb_007328_010--Hb_000522_120 Hb_001677_130 Hb_001677_130 Hb_007328_010--Hb_001677_130 Hb_002849_030 Hb_002849_030 Hb_007328_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_007328_010--Hb_073870_020 Hb_141990_050--Hb_000522_120 Hb_141990_050--Hb_009189_010 Hb_141990_050--Hb_002849_030 Hb_141990_050--Hb_073870_020 Hb_005588_010 Hb_005588_010 Hb_141990_050--Hb_005588_010 Hb_001411_150 Hb_001411_150 Hb_009189_010--Hb_001411_150 Hb_009189_010--Hb_073870_020 Hb_007383_050 Hb_007383_050 Hb_009189_010--Hb_007383_050 Hb_009189_010--Hb_002849_030 Hb_000347_360 Hb_000347_360 Hb_009189_010--Hb_000347_360 Hb_001289_030 Hb_001289_030 Hb_009189_010--Hb_001289_030 Hb_031862_150 Hb_031862_150 Hb_000522_120--Hb_031862_150 Hb_005643_020 Hb_005643_020 Hb_000522_120--Hb_005643_020 Hb_000522_120--Hb_005588_010 Hb_022768_010 Hb_022768_010 Hb_000522_120--Hb_022768_010 Hb_000398_200 Hb_000398_200 Hb_001677_130--Hb_000398_200 Hb_000117_110 Hb_000117_110 Hb_001677_130--Hb_000117_110 Hb_004712_140 Hb_004712_140 Hb_001677_130--Hb_004712_140 Hb_091913_010 Hb_091913_010 Hb_001677_130--Hb_091913_010 Hb_010327_010 Hb_010327_010 Hb_001677_130--Hb_010327_010 Hb_002849_030--Hb_000347_360 Hb_002849_030--Hb_073870_020 Hb_000322_020 Hb_000322_020 Hb_002849_030--Hb_000322_020 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_048538_010 Hb_048538_010 Hb_002849_030--Hb_048538_010 Hb_073870_020--Hb_000347_360 Hb_027214_060 Hb_027214_060 Hb_073870_020--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_073870_020--Hb_000227_410 Hb_073870_020--Hb_048538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.51978 0.681991 0.427169 0.00585554 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0141876 0 0 0.13283 0.357448

CAGE analysis