Hb_000398_200

Information

Type -
Description -
Location Contig398: 275648-278431
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08030g
description POPTRDRAFT_1104923; hypothetical protein
nr
ID XP_012069136.1
description PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0Z0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24902 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_200 0.0 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
2 Hb_001677_130 0.0537477088 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
3 Hb_000117_110 0.0683113195 - - transferase, putative [Ricinus communis]
4 Hb_004712_140 0.1078030083 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_003376_150 0.114426621 - - PREDICTED: peroxidase 21 [Jatropha curcas]
6 Hb_007328_010 0.1270954022 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
7 Hb_011925_010 0.1313370816 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
8 Hb_010327_010 0.1325310956 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_041290_030 0.1336598715 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
10 Hb_000625_040 0.1358135379 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
11 Hb_002218_060 0.1362350775 - - conserved hypothetical protein [Ricinus communis]
12 Hb_030370_070 0.1390212922 - - ATP binding protein, putative [Ricinus communis]
13 Hb_007305_040 0.1412279411 - - Nodulin-26, putative [Ricinus communis]
14 Hb_001274_040 0.144933057 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
15 Hb_006052_040 0.1450182127 - - pyruvate decarboxylase [Hevea brasiliensis]
16 Hb_008550_030 0.1455707268 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
17 Hb_001031_020 0.1456999765 - - hypothetical protein VITISV_000631 [Vitis vinifera]
18 Hb_166155_010 0.1458068321 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
19 Hb_009189_010 0.1466997397 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
20 Hb_000119_050 0.1468562595 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000398_200 Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_000398_200--Hb_001677_130 Hb_000117_110 Hb_000117_110 Hb_000398_200--Hb_000117_110 Hb_004712_140 Hb_004712_140 Hb_000398_200--Hb_004712_140 Hb_003376_150 Hb_003376_150 Hb_000398_200--Hb_003376_150 Hb_007328_010 Hb_007328_010 Hb_000398_200--Hb_007328_010 Hb_011925_010 Hb_011925_010 Hb_000398_200--Hb_011925_010 Hb_001677_130--Hb_000117_110 Hb_001677_130--Hb_007328_010 Hb_001677_130--Hb_004712_140 Hb_091913_010 Hb_091913_010 Hb_001677_130--Hb_091913_010 Hb_010327_010 Hb_010327_010 Hb_001677_130--Hb_010327_010 Hb_000117_110--Hb_004712_140 Hb_000117_110--Hb_010327_010 Hb_002218_060 Hb_002218_060 Hb_000117_110--Hb_002218_060 Hb_000117_110--Hb_091913_010 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_006052_040 Hb_006052_040 Hb_003376_150--Hb_006052_040 Hb_000625_040 Hb_000625_040 Hb_003376_150--Hb_000625_040 Hb_009786_010 Hb_009786_010 Hb_003376_150--Hb_009786_010 Hb_166155_010 Hb_166155_010 Hb_003376_150--Hb_166155_010 Hb_005048_080 Hb_005048_080 Hb_003376_150--Hb_005048_080 Hb_141990_050 Hb_141990_050 Hb_007328_010--Hb_141990_050 Hb_009189_010 Hb_009189_010 Hb_007328_010--Hb_009189_010 Hb_000522_120 Hb_000522_120 Hb_007328_010--Hb_000522_120 Hb_002849_030 Hb_002849_030 Hb_007328_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_007328_010--Hb_073870_020 Hb_001274_040 Hb_001274_040 Hb_011925_010--Hb_001274_040 Hb_007371_020 Hb_007371_020 Hb_011925_010--Hb_007371_020 Hb_002890_060 Hb_002890_060 Hb_011925_010--Hb_002890_060 Hb_009778_030 Hb_009778_030 Hb_011925_010--Hb_009778_030 Hb_000039_100 Hb_000039_100 Hb_011925_010--Hb_000039_100 Hb_000123_310 Hb_000123_310 Hb_011925_010--Hb_000123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.15212 0.312147 0.619172 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.269035 0.581389

CAGE analysis