Hb_009778_030

Information

Type transcription factor
Description TF Family: TCP
Location Contig9778: 40099-41322
Sequence    

Annotation

kegg
ID rcu:RCOM_0685420
description transcription factor, putative
nr
ID XP_011009347.1
description PREDICTED: transcription factor TCP23-like [Populus euphratica]
swissprot
ID Q9LQF0
description Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1
trembl
ID B9SLD5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0685420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009778_030 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
2 Hb_000146_110 0.0610917365 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
3 Hb_000003_620 0.0767660288 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
4 Hb_002890_060 0.0826730046 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
5 Hb_000111_130 0.0884018751 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_000123_310 0.0897820312 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
7 Hb_001363_030 0.0930272985 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
8 Hb_007371_020 0.0960464203 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
9 Hb_005054_300 0.1013267715 - - aquaporin [Hevea brasiliensis]
10 Hb_149056_010 0.1067891263 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
11 Hb_002783_300 0.1079894267 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_001274_040 0.1118396424 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
13 Hb_010962_030 0.1124022858 - - kinase, putative [Ricinus communis]
14 Hb_001009_110 0.1184504765 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
15 Hb_001365_040 0.1208783689 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
16 Hb_011925_010 0.1222399713 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
17 Hb_000521_290 0.1237051651 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
18 Hb_021596_070 0.1250603739 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
19 Hb_002219_090 0.125186693 - - protein kinase atmrk1, putative [Ricinus communis]
20 Hb_010620_020 0.1286572258 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009778_030 Hb_009778_030 Hb_000146_110 Hb_000146_110 Hb_009778_030--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_009778_030--Hb_000003_620 Hb_002890_060 Hb_002890_060 Hb_009778_030--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_009778_030--Hb_000111_130 Hb_000123_310 Hb_000123_310 Hb_009778_030--Hb_000123_310 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_000146_110--Hb_000003_620 Hb_000146_110--Hb_002890_060 Hb_000146_110--Hb_000111_130 Hb_000146_110--Hb_000123_310 Hb_007371_020 Hb_007371_020 Hb_000146_110--Hb_007371_020 Hb_000003_620--Hb_000111_130 Hb_000003_620--Hb_001363_030 Hb_000003_620--Hb_007371_020 Hb_001365_040 Hb_001365_040 Hb_000003_620--Hb_001365_040 Hb_002890_060--Hb_000111_130 Hb_001274_040 Hb_001274_040 Hb_002890_060--Hb_001274_040 Hb_002890_060--Hb_000123_310 Hb_002890_060--Hb_000003_620 Hb_000111_130--Hb_001274_040 Hb_000111_130--Hb_001365_040 Hb_005054_300 Hb_005054_300 Hb_000123_310--Hb_005054_300 Hb_041290_030 Hb_041290_030 Hb_000123_310--Hb_041290_030 Hb_021596_070 Hb_021596_070 Hb_000123_310--Hb_021596_070 Hb_001363_030--Hb_001365_040 Hb_004970_130 Hb_004970_130 Hb_001363_030--Hb_004970_130 Hb_118777_010 Hb_118777_010 Hb_001363_030--Hb_118777_010 Hb_001363_030--Hb_000111_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.372696 95.4384 4.78131 9.55286 0.0325136 0.0819713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0580389 23.7139 9.49241

CAGE analysis