Hb_001365_040

Information

Type -
Description -
Location Contig1365: 121598-126731
Sequence    

Annotation

kegg
ID tcc:TCM_028924
description Leucine-rich repeat transmembrane protein kinase protein, putative
nr
ID XP_011002652.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
swissprot
ID O64556
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 OS=Arabidopsis thaliana GN=At2g19230 PE=3 SV=3
trembl
ID A0A061GBL2
description Leucine-rich repeat transmembrane protein kinase protein, putative OS=Theobroma cacao GN=TCM_028924 PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g05700 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001365_040 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
2 Hb_001363_030 0.0773747493 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
3 Hb_000111_130 0.080971198 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_001013_010 0.0990358749 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000003_620 0.1000102851 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
6 Hb_002025_370 0.1069405647 - - monooxygenase, putative [Ricinus communis]
7 Hb_009778_030 0.1208783689 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
8 Hb_004970_130 0.1225575232 - - PREDICTED: uncharacterized protein LOC105633891 [Jatropha curcas]
9 Hb_001363_010 0.1249271657 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
10 Hb_005396_100 0.1314237743 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000146_110 0.1320905738 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
12 Hb_001274_040 0.136762983 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
13 Hb_002890_060 0.137122665 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
14 Hb_001477_120 0.1421030203 - - hypothetical protein JCGZ_25721 [Jatropha curcas]
15 Hb_005054_300 0.1434469429 - - aquaporin [Hevea brasiliensis]
16 Hb_118777_010 0.1466613227 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_000345_190 0.1525412604 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
18 Hb_001009_110 0.1537975616 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
19 Hb_000977_160 0.1560907983 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
20 Hb_010620_020 0.1564428568 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001365_040 Hb_001365_040 Hb_001363_030 Hb_001363_030 Hb_001365_040--Hb_001363_030 Hb_000111_130 Hb_000111_130 Hb_001365_040--Hb_000111_130 Hb_001013_010 Hb_001013_010 Hb_001365_040--Hb_001013_010 Hb_000003_620 Hb_000003_620 Hb_001365_040--Hb_000003_620 Hb_002025_370 Hb_002025_370 Hb_001365_040--Hb_002025_370 Hb_009778_030 Hb_009778_030 Hb_001365_040--Hb_009778_030 Hb_001363_030--Hb_000003_620 Hb_001363_030--Hb_009778_030 Hb_004970_130 Hb_004970_130 Hb_001363_030--Hb_004970_130 Hb_118777_010 Hb_118777_010 Hb_001363_030--Hb_118777_010 Hb_001363_030--Hb_000111_130 Hb_001274_040 Hb_001274_040 Hb_000111_130--Hb_001274_040 Hb_002890_060 Hb_002890_060 Hb_000111_130--Hb_002890_060 Hb_000111_130--Hb_000003_620 Hb_000111_130--Hb_009778_030 Hb_000146_110 Hb_000146_110 Hb_000111_130--Hb_000146_110 Hb_001013_010--Hb_000111_130 Hb_000345_190 Hb_000345_190 Hb_001013_010--Hb_000345_190 Hb_001013_010--Hb_001363_030 Hb_005396_100 Hb_005396_100 Hb_001013_010--Hb_005396_100 Hb_001013_010--Hb_009778_030 Hb_000003_620--Hb_000146_110 Hb_000003_620--Hb_009778_030 Hb_007371_020 Hb_007371_020 Hb_000003_620--Hb_007371_020 Hb_039650_010 Hb_039650_010 Hb_002025_370--Hb_039650_010 Hb_002025_370--Hb_000111_130 Hb_004940_090 Hb_004940_090 Hb_002025_370--Hb_004940_090 Hb_002025_370--Hb_001274_040 Hb_008707_020 Hb_008707_020 Hb_002025_370--Hb_008707_020 Hb_009778_030--Hb_000146_110 Hb_009778_030--Hb_002890_060 Hb_000123_310 Hb_000123_310 Hb_009778_030--Hb_000123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.98601 0.0269621 0.075942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.54624 0.165567

CAGE analysis