Hb_000111_130

Information

Type -
Description -
Location Contig111: 156071-159001
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_011020398.1
description PREDICTED: receptor-like protein 12 [Populus euphratica]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9RMI5
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080970 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_130 0.0 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
2 Hb_001274_040 0.064443323 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
3 Hb_002890_060 0.0725951292 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
4 Hb_000003_620 0.0786875751 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
5 Hb_001365_040 0.080971198 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
6 Hb_009778_030 0.0884018751 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
7 Hb_000146_110 0.0914312314 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
8 Hb_002025_370 0.1031170242 - - monooxygenase, putative [Ricinus communis]
9 Hb_001363_030 0.1067779151 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
10 Hb_000318_460 0.1152776394 - - hypothetical protein CICLE_v10028333mg [Citrus clementina]
11 Hb_001013_010 0.1166450129 - - cytochrome P450, putative [Ricinus communis]
12 Hb_007371_020 0.118364351 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
13 Hb_000767_040 0.1197355426 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000123_310 0.1246097456 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
15 Hb_005054_300 0.1259794403 - - aquaporin [Hevea brasiliensis]
16 Hb_000119_050 0.1285182278 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
17 Hb_008707_020 0.1306723092 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001376_020 0.130960928 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
19 Hb_011925_010 0.1374712826 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
20 Hb_010327_010 0.1432801023 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_130 Hb_000111_130 Hb_001274_040 Hb_001274_040 Hb_000111_130--Hb_001274_040 Hb_002890_060 Hb_002890_060 Hb_000111_130--Hb_002890_060 Hb_000003_620 Hb_000003_620 Hb_000111_130--Hb_000003_620 Hb_001365_040 Hb_001365_040 Hb_000111_130--Hb_001365_040 Hb_009778_030 Hb_009778_030 Hb_000111_130--Hb_009778_030 Hb_000146_110 Hb_000146_110 Hb_000111_130--Hb_000146_110 Hb_001274_040--Hb_002890_060 Hb_000039_100 Hb_000039_100 Hb_001274_040--Hb_000039_100 Hb_000767_040 Hb_000767_040 Hb_001274_040--Hb_000767_040 Hb_000318_460 Hb_000318_460 Hb_001274_040--Hb_000318_460 Hb_008707_020 Hb_008707_020 Hb_001274_040--Hb_008707_020 Hb_002890_060--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_002890_060--Hb_000123_310 Hb_002890_060--Hb_000146_110 Hb_002890_060--Hb_000003_620 Hb_000003_620--Hb_000146_110 Hb_000003_620--Hb_009778_030 Hb_001363_030 Hb_001363_030 Hb_000003_620--Hb_001363_030 Hb_007371_020 Hb_007371_020 Hb_000003_620--Hb_007371_020 Hb_000003_620--Hb_001365_040 Hb_001365_040--Hb_001363_030 Hb_001013_010 Hb_001013_010 Hb_001365_040--Hb_001013_010 Hb_002025_370 Hb_002025_370 Hb_001365_040--Hb_002025_370 Hb_001365_040--Hb_009778_030 Hb_009778_030--Hb_000146_110 Hb_009778_030--Hb_000123_310 Hb_009778_030--Hb_001363_030 Hb_000146_110--Hb_000123_310 Hb_000146_110--Hb_007371_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.92749 0.0196877 0.0602243 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.171896 0.0749309

CAGE analysis