Hb_000318_460

Information

Type -
Description -
Location Contig318: 463463-464911
Sequence    

Annotation

kegg
ID cic:CICLE_v10028333mg
description hypothetical protein
nr
ID XP_006423164.1
description hypothetical protein CICLE_v10028333mg [Citrus clementina]
swissprot
ID Q40778
description Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2
trembl
ID V4UAV5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028333mg PE=4 SV=1
Gene Ontology
ID GO:0004497
description allene oxide synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_460 0.0 - - hypothetical protein CICLE_v10028333mg [Citrus clementina]
2 Hb_001274_040 0.1038354202 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
3 Hb_000111_130 0.1152776394 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_005081_060 0.119765931 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
5 Hb_002890_060 0.1252451503 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
6 Hb_000767_040 0.1348060947 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000039_100 0.1350574943 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
8 Hb_008707_020 0.142525542 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000146_110 0.1435993061 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
10 Hb_001376_020 0.1446653991 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
11 Hb_029866_140 0.1484795526 - - PREDICTED: hevamine-A [Jatropha curcas]
12 Hb_000119_050 0.1492546814 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
13 Hb_000003_620 0.1504342458 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
14 Hb_011054_030 0.1512565816 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
15 Hb_002025_370 0.1523768238 - - monooxygenase, putative [Ricinus communis]
16 Hb_000123_310 0.1524620804 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
17 Hb_009778_030 0.1536363169 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
18 Hb_039650_010 0.1542222107 - - cellulose synthase-like protein [Populus tomentosa]
19 Hb_011925_010 0.1586669464 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
20 Hb_000172_300 0.1606146657 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000318_460 Hb_000318_460 Hb_001274_040 Hb_001274_040 Hb_000318_460--Hb_001274_040 Hb_000111_130 Hb_000111_130 Hb_000318_460--Hb_000111_130 Hb_005081_060 Hb_005081_060 Hb_000318_460--Hb_005081_060 Hb_002890_060 Hb_002890_060 Hb_000318_460--Hb_002890_060 Hb_000767_040 Hb_000767_040 Hb_000318_460--Hb_000767_040 Hb_000039_100 Hb_000039_100 Hb_000318_460--Hb_000039_100 Hb_001274_040--Hb_000111_130 Hb_001274_040--Hb_002890_060 Hb_001274_040--Hb_000039_100 Hb_001274_040--Hb_000767_040 Hb_008707_020 Hb_008707_020 Hb_001274_040--Hb_008707_020 Hb_000111_130--Hb_002890_060 Hb_000003_620 Hb_000003_620 Hb_000111_130--Hb_000003_620 Hb_001365_040 Hb_001365_040 Hb_000111_130--Hb_001365_040 Hb_009778_030 Hb_009778_030 Hb_000111_130--Hb_009778_030 Hb_000146_110 Hb_000146_110 Hb_000111_130--Hb_000146_110 Hb_003847_140 Hb_003847_140 Hb_005081_060--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_005081_060--Hb_039650_010 Hb_000656_360 Hb_000656_360 Hb_005081_060--Hb_000656_360 Hb_005081_060--Hb_001274_040 Hb_005081_060--Hb_008707_020 Hb_001437_200 Hb_001437_200 Hb_005081_060--Hb_001437_200 Hb_002890_060--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_002890_060--Hb_000123_310 Hb_002890_060--Hb_000146_110 Hb_002890_060--Hb_000003_620 Hb_066262_010 Hb_066262_010 Hb_000767_040--Hb_066262_010 Hb_000767_040--Hb_005081_060 Hb_000767_040--Hb_000111_130 Hb_000119_050 Hb_000119_050 Hb_000767_040--Hb_000119_050 Hb_000767_040--Hb_003847_140 Hb_011054_030 Hb_011054_030 Hb_000039_100--Hb_011054_030 Hb_000172_300 Hb_000172_300 Hb_000039_100--Hb_000172_300 Hb_048653_040 Hb_048653_040 Hb_000039_100--Hb_048653_040 Hb_000039_100--Hb_001437_200 Hb_000039_100--Hb_005081_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.974222 0.0212353 0.0745505 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0255691 0 0.132745 0.0534128

CAGE analysis