Hb_001274_040

Information

Type -
Description -
Location Contig1274: 27799-47396
Sequence    

Annotation

kegg
ID rcu:RCOM_0519490
description hypothetical protein
nr
ID XP_012074974.1
description PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SRZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0519490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08364: 27528-30634
cDNA
(Sanger)
(ID:Location)		 038_F11.ab1: 29807-30634 , 051_D10.ab1: 29959-30634

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001274_040 0.0 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
2 Hb_000111_130 0.064443323 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
3 Hb_002890_060 0.0746447961 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
4 Hb_000039_100 0.0973632293 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
5 Hb_000767_040 0.1013785104 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000318_460 0.1038354202 - - hypothetical protein CICLE_v10028333mg [Citrus clementina]
7 Hb_008707_020 0.1050238391 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000003_620 0.1089143695 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
9 Hb_005081_060 0.1092573882 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
10 Hb_000119_050 0.1103424805 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
11 Hb_011054_030 0.1104178453 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
12 Hb_001376_020 0.1106911781 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
13 Hb_007371_020 0.1116922377 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
14 Hb_009778_030 0.1118396424 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
15 Hb_002025_370 0.1124254367 - - monooxygenase, putative [Ricinus communis]
16 Hb_000146_110 0.1136293697 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
17 Hb_011925_010 0.1140949869 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
18 Hb_000123_310 0.1146151257 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
19 Hb_039650_010 0.115188602 - - cellulose synthase-like protein [Populus tomentosa]
20 Hb_029866_140 0.1170140177 - - PREDICTED: hevamine-A [Jatropha curcas]

Gene co-expression network

sample Hb_001274_040 Hb_001274_040 Hb_000111_130 Hb_000111_130 Hb_001274_040--Hb_000111_130 Hb_002890_060 Hb_002890_060 Hb_001274_040--Hb_002890_060 Hb_000039_100 Hb_000039_100 Hb_001274_040--Hb_000039_100 Hb_000767_040 Hb_000767_040 Hb_001274_040--Hb_000767_040 Hb_000318_460 Hb_000318_460 Hb_001274_040--Hb_000318_460 Hb_008707_020 Hb_008707_020 Hb_001274_040--Hb_008707_020 Hb_000111_130--Hb_002890_060 Hb_000003_620 Hb_000003_620 Hb_000111_130--Hb_000003_620 Hb_001365_040 Hb_001365_040 Hb_000111_130--Hb_001365_040 Hb_009778_030 Hb_009778_030 Hb_000111_130--Hb_009778_030 Hb_000146_110 Hb_000146_110 Hb_000111_130--Hb_000146_110 Hb_002890_060--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_002890_060--Hb_000123_310 Hb_002890_060--Hb_000146_110 Hb_002890_060--Hb_000003_620 Hb_011054_030 Hb_011054_030 Hb_000039_100--Hb_011054_030 Hb_000172_300 Hb_000172_300 Hb_000039_100--Hb_000172_300 Hb_048653_040 Hb_048653_040 Hb_000039_100--Hb_048653_040 Hb_001437_200 Hb_001437_200 Hb_000039_100--Hb_001437_200 Hb_005081_060 Hb_005081_060 Hb_000039_100--Hb_005081_060 Hb_066262_010 Hb_066262_010 Hb_000767_040--Hb_066262_010 Hb_000767_040--Hb_005081_060 Hb_000767_040--Hb_000111_130 Hb_000119_050 Hb_000119_050 Hb_000767_040--Hb_000119_050 Hb_003847_140 Hb_003847_140 Hb_000767_040--Hb_003847_140 Hb_000318_460--Hb_000111_130 Hb_000318_460--Hb_005081_060 Hb_000318_460--Hb_002890_060 Hb_000318_460--Hb_000767_040 Hb_000318_460--Hb_000039_100 Hb_001376_020 Hb_001376_020 Hb_008707_020--Hb_001376_020 Hb_000035_360 Hb_000035_360 Hb_008707_020--Hb_000035_360 Hb_008707_020--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_008707_020--Hb_039650_010 Hb_011924_030 Hb_011924_030 Hb_008707_020--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_008707_020--Hb_001486_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0460702 98.8612 2.71456 7.0711 0.0105712 0.0482584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0370634 0.00486163 0.00938484 12.7594 5.8668

CAGE analysis