Hb_011054_030

Information

Type -
Description -
Location Contig11054: 12939-32668
Sequence    

Annotation

kegg
ID pmum:103324687
description uncharacterized LOC103324687
nr
ID XP_008225008.1
description PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
swissprot
ID Q9M0X5
description Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=3 SV=1
trembl
ID A0A0E0I4D8
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0004672
description cysteine-rich receptor-like protein kinase 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011054_030 0.0 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
2 Hb_000039_100 0.0857799082 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
3 Hb_005054_300 0.0885504188 - - aquaporin [Hevea brasiliensis]
4 Hb_021596_070 0.0892574939 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
5 Hb_111985_060 0.0923723003 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
6 Hb_008667_020 0.0930257865 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
7 Hb_029866_140 0.0995083145 - - PREDICTED: hevamine-A [Jatropha curcas]
8 Hb_001376_020 0.1001015306 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
9 Hb_000123_310 0.1074269012 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
10 Hb_000172_300 0.1084273486 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
11 Hb_001274_040 0.1104178453 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
12 Hb_048653_040 0.1128890943 - - ankyrin repeat family protein [Populus trichocarpa]
13 Hb_001486_130 0.1147130458 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
14 Hb_007371_020 0.1183456572 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
15 Hb_010962_030 0.1210590776 - - kinase, putative [Ricinus communis]
16 Hb_007433_020 0.121555093 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_008707_020 0.1244587202 - - ATP binding protein, putative [Ricinus communis]
18 Hb_003090_060 0.1272375859 - - PAR1 protein [Theobroma cacao]
19 Hb_000347_370 0.1284635158 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
20 Hb_012702_010 0.1300988848 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]

Gene co-expression network

sample Hb_011054_030 Hb_011054_030 Hb_000039_100 Hb_000039_100 Hb_011054_030--Hb_000039_100 Hb_005054_300 Hb_005054_300 Hb_011054_030--Hb_005054_300 Hb_021596_070 Hb_021596_070 Hb_011054_030--Hb_021596_070 Hb_111985_060 Hb_111985_060 Hb_011054_030--Hb_111985_060 Hb_008667_020 Hb_008667_020 Hb_011054_030--Hb_008667_020 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_000172_300 Hb_000172_300 Hb_000039_100--Hb_000172_300 Hb_001274_040 Hb_001274_040 Hb_000039_100--Hb_001274_040 Hb_048653_040 Hb_048653_040 Hb_000039_100--Hb_048653_040 Hb_001437_200 Hb_001437_200 Hb_000039_100--Hb_001437_200 Hb_005081_060 Hb_005081_060 Hb_000039_100--Hb_005081_060 Hb_005054_300--Hb_111985_060 Hb_003090_060 Hb_003090_060 Hb_005054_300--Hb_003090_060 Hb_009778_030 Hb_009778_030 Hb_005054_300--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_005054_300--Hb_000123_310 Hb_002219_090 Hb_002219_090 Hb_005054_300--Hb_002219_090 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_010962_030 Hb_010962_030 Hb_021596_070--Hb_010962_030 Hb_007371_020 Hb_007371_020 Hb_021596_070--Hb_007371_020 Hb_021596_070--Hb_111985_060 Hb_111985_060--Hb_003090_060 Hb_002621_030 Hb_002621_030 Hb_111985_060--Hb_002621_030 Hb_111985_060--Hb_008667_020 Hb_008667_020--Hb_007433_020 Hb_008667_020--Hb_007371_020 Hb_004712_140 Hb_004712_140 Hb_008667_020--Hb_004712_140 Hb_000656_360 Hb_000656_360 Hb_029866_140--Hb_000656_360 Hb_001376_020 Hb_001376_020 Hb_029866_140--Hb_001376_020 Hb_003847_140 Hb_003847_140 Hb_029866_140--Hb_003847_140 Hb_008707_020 Hb_008707_020 Hb_029866_140--Hb_008707_020 Hb_176149_010 Hb_176149_010 Hb_029866_140--Hb_176149_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.085723 30.9612 2.20335 2.61644 0.0231798 0.113957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0622403 0.0244917 0.0235978 4.84465 0.776976

CAGE analysis