Hb_004712_140

Information

Type -
Description -
Location Contig4712: 79984-83289
Sequence    

Annotation

kegg
ID cit:102619599
description probable LRR receptor-like serine/threonine-protein kinase At1g34110-like
nr
ID XP_012080817.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
swissprot
ID Q9ZWC8
description Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1
trembl
ID A0A067K325
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16186 PE=4 SV=1
Gene Ontology
ID GO:0044763
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_140 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
2 Hb_041290_030 0.087365973 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
3 Hb_010327_010 0.0944256541 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_000331_710 0.1030442747 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_021596_070 0.106617166 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_000398_200 0.1078030083 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
7 Hb_001677_130 0.1085355451 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
8 Hb_007371_020 0.1094353232 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
9 Hb_000117_110 0.1126829735 - - transferase, putative [Ricinus communis]
10 Hb_010962_030 0.1145839556 - - kinase, putative [Ricinus communis]
11 Hb_000146_110 0.1156675583 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
12 Hb_006052_040 0.1172961325 - - pyruvate decarboxylase [Hevea brasiliensis]
13 Hb_008667_020 0.1201394377 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
14 Hb_011925_010 0.1273141265 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
15 Hb_000123_310 0.127389595 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
16 Hb_007433_020 0.131590371 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_005545_080 0.1330216161 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
18 Hb_002890_060 0.1332444305 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
19 Hb_108055_010 0.1337323802 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_030370_070 0.1379404873 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004712_140 Hb_004712_140 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_010327_010 Hb_010327_010 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_000398_200 Hb_000398_200 Hb_004712_140--Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_004712_140--Hb_001677_130 Hb_000123_310 Hb_000123_310 Hb_041290_030--Hb_000123_310 Hb_010962_030 Hb_010962_030 Hb_041290_030--Hb_010962_030 Hb_006198_060 Hb_006198_060 Hb_041290_030--Hb_006198_060 Hb_006052_040 Hb_006052_040 Hb_041290_030--Hb_006052_040 Hb_000146_110 Hb_000146_110 Hb_041290_030--Hb_000146_110 Hb_007371_020 Hb_007371_020 Hb_010327_010--Hb_007371_020 Hb_108055_010 Hb_108055_010 Hb_010327_010--Hb_108055_010 Hb_000003_620 Hb_000003_620 Hb_010327_010--Hb_000003_620 Hb_000117_110 Hb_000117_110 Hb_010327_010--Hb_000117_110 Hb_010327_010--Hb_000146_110 Hb_013720_010 Hb_013720_010 Hb_000331_710--Hb_013720_010 Hb_000027_060 Hb_000027_060 Hb_000331_710--Hb_000027_060 Hb_000247_150 Hb_000247_150 Hb_000331_710--Hb_000247_150 Hb_000705_130 Hb_000705_130 Hb_000331_710--Hb_000705_130 Hb_006698_020 Hb_006698_020 Hb_000331_710--Hb_006698_020 Hb_008667_020 Hb_008667_020 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_021596_070--Hb_010962_030 Hb_011054_030 Hb_011054_030 Hb_021596_070--Hb_011054_030 Hb_021596_070--Hb_007371_020 Hb_111985_060 Hb_111985_060 Hb_021596_070--Hb_111985_060 Hb_000398_200--Hb_001677_130 Hb_000398_200--Hb_000117_110 Hb_003376_150 Hb_003376_150 Hb_000398_200--Hb_003376_150 Hb_007328_010 Hb_007328_010 Hb_000398_200--Hb_007328_010 Hb_011925_010 Hb_011925_010 Hb_000398_200--Hb_011925_010 Hb_001677_130--Hb_000117_110 Hb_001677_130--Hb_007328_010 Hb_091913_010 Hb_091913_010 Hb_001677_130--Hb_091913_010 Hb_001677_130--Hb_010327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.21405 0.678765 0.637146 0 0.0147428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0261324 0 0.709848 0.709074

CAGE analysis