Hb_011925_010

Information

Type -
Description -
Location Contig11925: 500-1258
Sequence    

Annotation

kegg
ID pop:POPTR_0017s015601
description hypothetical protein
nr
ID XP_012086124.1
description PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
swissprot
ID Q7KRY7
description Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1
trembl
ID U5FLH1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s015601g PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011925_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
2 Hb_001274_040 0.1140949869 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
3 Hb_007371_020 0.1144194971 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
4 Hb_002890_060 0.1203741919 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
5 Hb_009778_030 0.1222399713 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
6 Hb_000039_100 0.1246420492 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
7 Hb_000123_310 0.1262242892 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
8 Hb_004712_140 0.1273141265 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_000146_110 0.128815414 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
10 Hb_000398_200 0.1313370816 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
11 Hb_021596_070 0.134162353 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
12 Hb_000111_130 0.1374712826 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_000625_040 0.1389655273 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
14 Hb_011054_030 0.1392515731 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
15 Hb_010962_030 0.1394010072 - - kinase, putative [Ricinus communis]
16 Hb_041290_030 0.139830991 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
17 Hb_000117_110 0.1413813372 - - transferase, putative [Ricinus communis]
18 Hb_010327_010 0.1431428755 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_000767_040 0.1463729116 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000003_620 0.147096968 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_011925_010 Hb_011925_010 Hb_001274_040 Hb_001274_040 Hb_011925_010--Hb_001274_040 Hb_007371_020 Hb_007371_020 Hb_011925_010--Hb_007371_020 Hb_002890_060 Hb_002890_060 Hb_011925_010--Hb_002890_060 Hb_009778_030 Hb_009778_030 Hb_011925_010--Hb_009778_030 Hb_000039_100 Hb_000039_100 Hb_011925_010--Hb_000039_100 Hb_000123_310 Hb_000123_310 Hb_011925_010--Hb_000123_310 Hb_000111_130 Hb_000111_130 Hb_001274_040--Hb_000111_130 Hb_001274_040--Hb_002890_060 Hb_001274_040--Hb_000039_100 Hb_000767_040 Hb_000767_040 Hb_001274_040--Hb_000767_040 Hb_000318_460 Hb_000318_460 Hb_001274_040--Hb_000318_460 Hb_008707_020 Hb_008707_020 Hb_001274_040--Hb_008707_020 Hb_010962_030 Hb_010962_030 Hb_007371_020--Hb_010962_030 Hb_000003_620 Hb_000003_620 Hb_007371_020--Hb_000003_620 Hb_021596_070 Hb_021596_070 Hb_007371_020--Hb_021596_070 Hb_000146_110 Hb_000146_110 Hb_007371_020--Hb_000146_110 Hb_007371_020--Hb_009778_030 Hb_010327_010 Hb_010327_010 Hb_007371_020--Hb_010327_010 Hb_002890_060--Hb_000111_130 Hb_002890_060--Hb_009778_030 Hb_002890_060--Hb_000123_310 Hb_002890_060--Hb_000146_110 Hb_002890_060--Hb_000003_620 Hb_009778_030--Hb_000146_110 Hb_009778_030--Hb_000003_620 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_011054_030 Hb_011054_030 Hb_000039_100--Hb_011054_030 Hb_000172_300 Hb_000172_300 Hb_000039_100--Hb_000172_300 Hb_048653_040 Hb_048653_040 Hb_000039_100--Hb_048653_040 Hb_001437_200 Hb_001437_200 Hb_000039_100--Hb_001437_200 Hb_005081_060 Hb_005081_060 Hb_000039_100--Hb_005081_060 Hb_000123_310--Hb_000146_110 Hb_005054_300 Hb_005054_300 Hb_000123_310--Hb_005054_300 Hb_041290_030 Hb_041290_030 Hb_000123_310--Hb_041290_030 Hb_000123_310--Hb_021596_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0314284 1.32887 0.0725402 0.143573 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.161615 0.113659

CAGE analysis