Hb_000123_310

Information

Type -
Description -
Location Contig123: 276928-278029
Sequence    

Annotation

kegg
ID tcc:TCM_042892
description Tonoplast intrinsic protein 1,3
nr
ID XP_012081560.1
description PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
swissprot
ID O82598
description Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1
trembl
ID A0A067K4A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18448 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin tip1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06987: 276830-278041
cDNA
(Sanger)
(ID:Location)		 014_M18.ab1: 277247-278041 , 027_E06.ab1: 277615-278041 , 040_B23.ab1: 277217-278009

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_310 0.0 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
2 Hb_009778_030 0.0897820312 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
3 Hb_002890_060 0.09041572 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
4 Hb_000146_110 0.0933945634 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
5 Hb_005054_300 0.102461101 - - aquaporin [Hevea brasiliensis]
6 Hb_041290_030 0.1035657998 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
7 Hb_021596_070 0.1053400397 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_011054_030 0.1074269012 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
9 Hb_149056_010 0.1079418673 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
10 Hb_111985_060 0.1097401168 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
11 Hb_006198_060 0.1104260104 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
12 Hb_001274_040 0.1146151257 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
13 Hb_000338_030 0.1174544508 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
14 Hb_010962_030 0.1177124863 - - kinase, putative [Ricinus communis]
15 Hb_007371_020 0.1224581783 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
16 Hb_000111_130 0.1246097456 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
17 Hb_008667_020 0.125200513 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
18 Hb_011925_010 0.1262242892 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
19 Hb_000003_620 0.1269051435 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
20 Hb_004712_140 0.127389595 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_310 Hb_000123_310 Hb_009778_030 Hb_009778_030 Hb_000123_310--Hb_009778_030 Hb_002890_060 Hb_002890_060 Hb_000123_310--Hb_002890_060 Hb_000146_110 Hb_000146_110 Hb_000123_310--Hb_000146_110 Hb_005054_300 Hb_005054_300 Hb_000123_310--Hb_005054_300 Hb_041290_030 Hb_041290_030 Hb_000123_310--Hb_041290_030 Hb_021596_070 Hb_021596_070 Hb_000123_310--Hb_021596_070 Hb_009778_030--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_009778_030--Hb_000003_620 Hb_009778_030--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_009778_030--Hb_000111_130 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_002890_060--Hb_000111_130 Hb_001274_040 Hb_001274_040 Hb_002890_060--Hb_001274_040 Hb_002890_060--Hb_000146_110 Hb_002890_060--Hb_000003_620 Hb_000146_110--Hb_000003_620 Hb_000146_110--Hb_000111_130 Hb_007371_020 Hb_007371_020 Hb_000146_110--Hb_007371_020 Hb_111985_060 Hb_111985_060 Hb_005054_300--Hb_111985_060 Hb_011054_030 Hb_011054_030 Hb_005054_300--Hb_011054_030 Hb_003090_060 Hb_003090_060 Hb_005054_300--Hb_003090_060 Hb_005054_300--Hb_009778_030 Hb_002219_090 Hb_002219_090 Hb_005054_300--Hb_002219_090 Hb_004712_140 Hb_004712_140 Hb_041290_030--Hb_004712_140 Hb_010962_030 Hb_010962_030 Hb_041290_030--Hb_010962_030 Hb_006198_060 Hb_006198_060 Hb_041290_030--Hb_006198_060 Hb_006052_040 Hb_006052_040 Hb_041290_030--Hb_006052_040 Hb_041290_030--Hb_000146_110 Hb_008667_020 Hb_008667_020 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_021596_070--Hb_010962_030 Hb_021596_070--Hb_011054_030 Hb_021596_070--Hb_007371_020 Hb_021596_070--Hb_111985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0788323 429.786 28.0554 64.637 0.227251 0.274853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55658 0.131159 0 86.1196 29.5289

CAGE analysis