Hb_006198_060

Information

Type -
Description -
Location Contig6198: 42669-44999
Sequence    

Annotation

kegg
ID rcu:RCOM_1721260
description hypothetical protein
nr
ID XP_012085137.1
description PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
swissprot
ID Q8GXU5
description Protein SULFUR DEFICIENCY-INDUCED 1 OS=Arabidopsis thaliana GN=SDI1 PE=2 SV=1
trembl
ID A0A067K2B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17563 PE=4 SV=1
Gene Ontology
ID GO:0016757
description protein sulfur deficiency-induced 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51371: 44141-45026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_060 0.0 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
2 Hb_006052_040 0.0823102927 - - pyruvate decarboxylase [Hevea brasiliensis]
3 Hb_004122_020 0.0927862173 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
4 Hb_041290_030 0.1086824941 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
5 Hb_000123_310 0.1104260104 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
6 Hb_000338_030 0.1204282062 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
7 Hb_000579_220 0.1290326369 - - transcription factor, putative [Ricinus communis]
8 Hb_002968_010 0.1299368304 - - PREDICTED: pectinesterase [Jatropha curcas]
9 Hb_002475_010 0.1300200722 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
10 Hb_000808_160 0.1315914434 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
11 Hb_002571_010 0.1323429778 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_009247_030 0.1335558114 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_007237_090 0.1337628042 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002783_300 0.1345358939 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_020648_020 0.1351282709 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
16 Hb_021596_070 0.1371451626 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
17 Hb_073119_010 0.1385084312 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
18 Hb_000819_010 0.1392886408 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
19 Hb_000000_070 0.1403643855 - - allene oxide synthase [Hevea brasiliensis]
20 Hb_002239_020 0.1405547869 - - MLO, putative [Theobroma cacao]

Gene co-expression network

sample Hb_006198_060 Hb_006198_060 Hb_006052_040 Hb_006052_040 Hb_006198_060--Hb_006052_040 Hb_004122_020 Hb_004122_020 Hb_006198_060--Hb_004122_020 Hb_041290_030 Hb_041290_030 Hb_006198_060--Hb_041290_030 Hb_000123_310 Hb_000123_310 Hb_006198_060--Hb_000123_310 Hb_000338_030 Hb_000338_030 Hb_006198_060--Hb_000338_030 Hb_000579_220 Hb_000579_220 Hb_006198_060--Hb_000579_220 Hb_006052_040--Hb_004122_020 Hb_002475_010 Hb_002475_010 Hb_006052_040--Hb_002475_010 Hb_003376_150 Hb_003376_150 Hb_006052_040--Hb_003376_150 Hb_004712_140 Hb_004712_140 Hb_006052_040--Hb_004712_140 Hb_006052_040--Hb_041290_030 Hb_002968_010 Hb_002968_010 Hb_004122_020--Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_004122_020--Hb_000656_370 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_041290_030--Hb_004712_140 Hb_041290_030--Hb_000123_310 Hb_010962_030 Hb_010962_030 Hb_041290_030--Hb_010962_030 Hb_000146_110 Hb_000146_110 Hb_041290_030--Hb_000146_110 Hb_009778_030 Hb_009778_030 Hb_000123_310--Hb_009778_030 Hb_002890_060 Hb_002890_060 Hb_000123_310--Hb_002890_060 Hb_000123_310--Hb_000146_110 Hb_005054_300 Hb_005054_300 Hb_000123_310--Hb_005054_300 Hb_021596_070 Hb_021596_070 Hb_000123_310--Hb_021596_070 Hb_020648_020 Hb_020648_020 Hb_000338_030--Hb_020648_020 Hb_002410_010 Hb_002410_010 Hb_000338_030--Hb_002410_010 Hb_008667_030 Hb_008667_030 Hb_000338_030--Hb_008667_030 Hb_000098_250 Hb_000098_250 Hb_000338_030--Hb_000098_250 Hb_002529_080 Hb_002529_080 Hb_000338_030--Hb_002529_080 Hb_117127_010 Hb_117127_010 Hb_000338_030--Hb_117127_010 Hb_007237_090 Hb_007237_090 Hb_000579_220--Hb_007237_090 Hb_084127_010 Hb_084127_010 Hb_000579_220--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_000579_220--Hb_006615_190 Hb_000172_010 Hb_000172_010 Hb_000579_220--Hb_000172_010 Hb_000579_220--Hb_020648_020 Hb_000521_210 Hb_000521_210 Hb_000579_220--Hb_000521_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278398 11.2103 1.13639 2.52686 0.0223345 0.157386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101987 0 0 2.17762 1.47632

CAGE analysis