Hb_000338_030

Information

Type transcription factor
Description TF Family: HB
Location Contig338: 34922-38350
Sequence    

Annotation

kegg
ID rcu:RCOM_0905400
description homeobox protein, putative
nr
ID KDP20783.1
description hypothetical protein JCGZ_21254 [Jatropha curcas]
swissprot
ID Q93V99
description Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1
trembl
ID A0A067JDG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21254 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein meristem l1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000338_030 0.0 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
2 Hb_020648_020 0.0632990154 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
3 Hb_002410_010 0.0722213064 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
4 Hb_008667_030 0.0925068962 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
5 Hb_000098_250 0.0931145447 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
6 Hb_002529_080 0.0957090128 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
7 Hb_117127_010 0.0999499607 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
8 Hb_000521_290 0.1120476494 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
9 Hb_174380_010 0.1122270184 - - kinase, putative [Ricinus communis]
10 Hb_004122_020 0.1153503835 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
11 Hb_000123_310 0.1174544508 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
12 Hb_007237_090 0.1195972156 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006615_180 0.1196438009 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
14 Hb_006198_060 0.1204282062 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
15 Hb_000000_070 0.1212591584 - - allene oxide synthase [Hevea brasiliensis]
16 Hb_000579_220 0.1212734212 - - transcription factor, putative [Ricinus communis]
17 Hb_084127_010 0.1229098158 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_006698_020 0.1258370918 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
19 Hb_065230_010 0.1273790298 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
20 Hb_000094_010 0.1294034677 - - lrr receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000338_030 Hb_000338_030 Hb_020648_020 Hb_020648_020 Hb_000338_030--Hb_020648_020 Hb_002410_010 Hb_002410_010 Hb_000338_030--Hb_002410_010 Hb_008667_030 Hb_008667_030 Hb_000338_030--Hb_008667_030 Hb_000098_250 Hb_000098_250 Hb_000338_030--Hb_000098_250 Hb_002529_080 Hb_002529_080 Hb_000338_030--Hb_002529_080 Hb_117127_010 Hb_117127_010 Hb_000338_030--Hb_117127_010 Hb_020648_020--Hb_002410_010 Hb_020648_020--Hb_000098_250 Hb_000579_220 Hb_000579_220 Hb_020648_020--Hb_000579_220 Hb_084127_010 Hb_084127_010 Hb_020648_020--Hb_084127_010 Hb_065230_010 Hb_065230_010 Hb_020648_020--Hb_065230_010 Hb_002410_010--Hb_000098_250 Hb_002410_010--Hb_117127_010 Hb_002410_010--Hb_065230_010 Hb_000771_030 Hb_000771_030 Hb_002410_010--Hb_000771_030 Hb_008667_030--Hb_002529_080 Hb_008667_030--Hb_117127_010 Hb_008667_030--Hb_000098_250 Hb_006698_020 Hb_006698_020 Hb_008667_030--Hb_006698_020 Hb_000000_070 Hb_000000_070 Hb_008667_030--Hb_000000_070 Hb_000098_250--Hb_117127_010 Hb_000098_250--Hb_002529_080 Hb_000098_250--Hb_000771_030 Hb_000094_010 Hb_000094_010 Hb_002529_080--Hb_000094_010 Hb_002529_080--Hb_000000_070 Hb_008040_060 Hb_008040_060 Hb_002529_080--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_002529_080--Hb_003914_050 Hb_117127_010--Hb_002529_080 Hb_006615_180 Hb_006615_180 Hb_117127_010--Hb_006615_180 Hb_117127_010--Hb_000000_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.42025 0.402195 0.575798 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.620759 0.219065

CAGE analysis