Hb_002410_010

Information

Type -
Description -
Location Contig2410: 6205-7677
Sequence    

Annotation

kegg
ID rcu:RCOM_0853500
description ATP binding protein, putative
nr
ID XP_012082696.1
description PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID A0A067LL41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09704 PE=3 SV=1
Gene Ontology
ID GO:0005524
description mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25249: 6669-7750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002410_010 0.0 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
2 Hb_020648_020 0.0575591227 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
3 Hb_000098_250 0.068642066 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
4 Hb_000338_030 0.0722213064 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
5 Hb_117127_010 0.0791794806 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
6 Hb_065230_010 0.0853397971 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
7 Hb_000771_030 0.1041614846 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_002529_080 0.1067246368 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
9 Hb_008667_030 0.1075357131 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
10 Hb_006615_180 0.10754335 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
11 Hb_000521_210 0.1113800867 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_084127_010 0.116862614 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_003556_070 0.1181255477 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_003602_090 0.1208097613 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
15 Hb_006634_080 0.1218103159 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
16 Hb_174380_010 0.1222183366 - - kinase, putative [Ricinus communis]
17 Hb_165404_010 0.1226673379 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
18 Hb_001073_060 0.1252658127 - - phosphate transporter 1 [Hevea brasiliensis]
19 Hb_000856_240 0.1255972237 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_002621_030 0.1260188948 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]

Gene co-expression network

sample Hb_002410_010 Hb_002410_010 Hb_020648_020 Hb_020648_020 Hb_002410_010--Hb_020648_020 Hb_000098_250 Hb_000098_250 Hb_002410_010--Hb_000098_250 Hb_000338_030 Hb_000338_030 Hb_002410_010--Hb_000338_030 Hb_117127_010 Hb_117127_010 Hb_002410_010--Hb_117127_010 Hb_065230_010 Hb_065230_010 Hb_002410_010--Hb_065230_010 Hb_000771_030 Hb_000771_030 Hb_002410_010--Hb_000771_030 Hb_020648_020--Hb_000338_030 Hb_020648_020--Hb_000098_250 Hb_000579_220 Hb_000579_220 Hb_020648_020--Hb_000579_220 Hb_084127_010 Hb_084127_010 Hb_020648_020--Hb_084127_010 Hb_020648_020--Hb_065230_010 Hb_000098_250--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000098_250--Hb_008667_030 Hb_002529_080 Hb_002529_080 Hb_000098_250--Hb_002529_080 Hb_000098_250--Hb_000771_030 Hb_000338_030--Hb_008667_030 Hb_000338_030--Hb_000098_250 Hb_000338_030--Hb_002529_080 Hb_000338_030--Hb_117127_010 Hb_117127_010--Hb_008667_030 Hb_117127_010--Hb_002529_080 Hb_006615_180 Hb_006615_180 Hb_117127_010--Hb_006615_180 Hb_000000_070 Hb_000000_070 Hb_117127_010--Hb_000000_070 Hb_065230_010--Hb_000771_030 Hb_131662_010 Hb_131662_010 Hb_065230_010--Hb_131662_010 Hb_065230_010--Hb_000098_250 Hb_000417_120 Hb_000417_120 Hb_065230_010--Hb_000417_120 Hb_000771_030--Hb_000417_120 Hb_000771_030--Hb_131662_010 Hb_000598_020 Hb_000598_020 Hb_000771_030--Hb_000598_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0662079 122.687 24.9218 38.1258 0.0131077 0.0508925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0637797 0.0250884 0.141308 43.1524 8.28645

CAGE analysis