Hb_117127_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig117127: 10655-12427
Sequence    

Annotation

kegg
ID rcu:RCOM_1637360
description DNA binding protein, putative
nr
ID XP_012084522.1
description PREDICTED: transcription factor bHLH106 [Jatropha curcas]
swissprot
ID O80674
description Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106 PE=2 SV=1
trembl
ID A0A067K5D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20010 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh106-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05299: 10699-12355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117127_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
2 Hb_000098_250 0.0694269587 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
3 Hb_008667_030 0.0779833645 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
4 Hb_002410_010 0.0791794806 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
5 Hb_002529_080 0.090495399 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
6 Hb_006615_180 0.0912567423 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
7 Hb_000000_070 0.0950640771 - - allene oxide synthase [Hevea brasiliensis]
8 Hb_001568_120 0.0971841694 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
9 Hb_000338_030 0.0999499607 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
10 Hb_003602_090 0.1002333496 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
11 Hb_041145_010 0.1013935337 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
12 Hb_009510_050 0.1060357508 - - conserved hypothetical protein [Ricinus communis]
13 Hb_174380_010 0.1076538244 - - kinase, putative [Ricinus communis]
14 Hb_006698_020 0.1092326033 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
15 Hb_020648_020 0.115250826 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
16 Hb_000771_030 0.1158724238 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_082870_010 0.1176926757 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_006634_080 0.1178008125 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
19 Hb_022206_030 0.1237385537 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_065230_010 0.1246593873 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]

Gene co-expression network

sample Hb_117127_010 Hb_117127_010 Hb_000098_250 Hb_000098_250 Hb_117127_010--Hb_000098_250 Hb_008667_030 Hb_008667_030 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_002529_080 Hb_002529_080 Hb_117127_010--Hb_002529_080 Hb_006615_180 Hb_006615_180 Hb_117127_010--Hb_006615_180 Hb_000000_070 Hb_000000_070 Hb_117127_010--Hb_000000_070 Hb_000098_250--Hb_002410_010 Hb_000098_250--Hb_008667_030 Hb_000098_250--Hb_002529_080 Hb_020648_020 Hb_020648_020 Hb_000098_250--Hb_020648_020 Hb_000771_030 Hb_000771_030 Hb_000098_250--Hb_000771_030 Hb_008667_030--Hb_002529_080 Hb_006698_020 Hb_006698_020 Hb_008667_030--Hb_006698_020 Hb_000338_030 Hb_000338_030 Hb_008667_030--Hb_000338_030 Hb_008667_030--Hb_000000_070 Hb_002410_010--Hb_020648_020 Hb_002410_010--Hb_000338_030 Hb_065230_010 Hb_065230_010 Hb_002410_010--Hb_065230_010 Hb_002410_010--Hb_000771_030 Hb_000094_010 Hb_000094_010 Hb_002529_080--Hb_000094_010 Hb_002529_080--Hb_000000_070 Hb_008040_060 Hb_008040_060 Hb_002529_080--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_002529_080--Hb_003914_050 Hb_003602_090 Hb_003602_090 Hb_006615_180--Hb_003602_090 Hb_000723_060 Hb_000723_060 Hb_006615_180--Hb_000723_060 Hb_006615_180--Hb_000000_070 Hb_000101_140 Hb_000101_140 Hb_006615_180--Hb_000101_140 Hb_009510_050 Hb_009510_050 Hb_006615_180--Hb_009510_050 Hb_001568_120 Hb_001568_120 Hb_000000_070--Hb_001568_120 Hb_004122_020 Hb_004122_020 Hb_000000_070--Hb_004122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0464556 40.9896 11.0719 13.9401 0.139578 0.0181797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0371734 0.0686675 10.2715 2.51936

CAGE analysis