Hb_002529_080

Information

Type -
Description -
Location Contig2529: 133312-136618
Sequence    

Annotation

kegg
ID rcu:RCOM_1688460
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_012086824.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
swissprot
ID P31531
description 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1
trembl
ID A0A067K0Q6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20540 PE=3 SV=1
Gene Ontology
ID GO:0003824
description 1-aminocyclopropane-1-carboxylate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26457: 133562-136361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002529_080 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
2 Hb_008667_030 0.0673287748 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_000094_010 0.0752509418 - - lrr receptor protein kinase, putative [Ricinus communis]
4 Hb_000000_070 0.0771252028 - - allene oxide synthase [Hevea brasiliensis]
5 Hb_008040_060 0.0783161902 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
6 Hb_000098_250 0.0814656842 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
7 Hb_003914_050 0.0838399252 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
8 Hb_117127_010 0.090495399 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
9 Hb_000338_030 0.0957090128 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
10 Hb_001248_170 0.0971700674 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_006615_180 0.1058774695 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
12 Hb_006698_020 0.1065543052 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
13 Hb_002410_010 0.1067246368 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_020648_020 0.1173227578 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
15 Hb_000976_340 0.1195950391 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_002370_060 0.1223527652 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
17 Hb_000771_030 0.1225195284 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_065230_010 0.1225299671 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
19 Hb_013720_010 0.1255531186 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
20 Hb_004122_020 0.1259970841 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]

Gene co-expression network

sample Hb_002529_080 Hb_002529_080 Hb_008667_030 Hb_008667_030 Hb_002529_080--Hb_008667_030 Hb_000094_010 Hb_000094_010 Hb_002529_080--Hb_000094_010 Hb_000000_070 Hb_000000_070 Hb_002529_080--Hb_000000_070 Hb_008040_060 Hb_008040_060 Hb_002529_080--Hb_008040_060 Hb_000098_250 Hb_000098_250 Hb_002529_080--Hb_000098_250 Hb_003914_050 Hb_003914_050 Hb_002529_080--Hb_003914_050 Hb_117127_010 Hb_117127_010 Hb_008667_030--Hb_117127_010 Hb_008667_030--Hb_000098_250 Hb_006698_020 Hb_006698_020 Hb_008667_030--Hb_006698_020 Hb_000338_030 Hb_000338_030 Hb_008667_030--Hb_000338_030 Hb_008667_030--Hb_000000_070 Hb_000094_010--Hb_003914_050 Hb_000116_290 Hb_000116_290 Hb_000094_010--Hb_000116_290 Hb_000094_010--Hb_008040_060 Hb_000976_340 Hb_000976_340 Hb_000094_010--Hb_000976_340 Hb_000522_130 Hb_000522_130 Hb_000094_010--Hb_000522_130 Hb_006615_180 Hb_006615_180 Hb_000000_070--Hb_006615_180 Hb_001568_120 Hb_001568_120 Hb_000000_070--Hb_001568_120 Hb_000000_070--Hb_117127_010 Hb_004122_020 Hb_004122_020 Hb_000000_070--Hb_004122_020 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_008040_060--Hb_003914_050 Hb_000027_060 Hb_000027_060 Hb_008040_060--Hb_000027_060 Hb_008040_060--Hb_000000_070 Hb_008040_060--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_000098_250--Hb_002410_010 Hb_000098_250--Hb_117127_010 Hb_020648_020 Hb_020648_020 Hb_000098_250--Hb_020648_020 Hb_000771_030 Hb_000771_030 Hb_000098_250--Hb_000771_030 Hb_003914_050--Hb_008667_030 Hb_012098_180 Hb_012098_180 Hb_003914_050--Hb_012098_180 Hb_003914_050--Hb_000027_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 20.6746 5.4482 7.17671 0 0.0191833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0226563 0.0356533 0.0338017 5.05692 3.08896

CAGE analysis