Hb_008040_060

Information

Type -
Description -
Location Contig8040: 66485-71979
Sequence    

Annotation

kegg
ID rcu:RCOM_0851590
description Potassium transporter, putative
nr
ID XP_012081921.1
description PREDICTED: potassium transporter 8 [Jatropha curcas]
swissprot
ID Q9M7J9
description Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8 PE=2 SV=2
trembl
ID A0A067LKY5
description Potassium transporter OS=Jatropha curcas GN=JCGZ_09629 PE=3 SV=1
Gene Ontology
ID GO:0016020
description potassium transporter 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58937: 69487-70394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008040_060 0.0 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
2 Hb_002529_080 0.0783161902 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
3 Hb_001248_170 0.0891769134 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_003914_050 0.0955264443 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
5 Hb_000027_060 0.101406993 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
6 Hb_000000_070 0.1018783509 - - allene oxide synthase [Hevea brasiliensis]
7 Hb_008667_030 0.101881759 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
8 Hb_001515_030 0.102017168 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000094_010 0.1027238247 - - lrr receptor protein kinase, putative [Ricinus communis]
10 Hb_000819_010 0.1027511541 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
11 Hb_000705_130 0.1035818322 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000522_130 0.103896561 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
13 Hb_002239_020 0.1109647966 - - MLO, putative [Theobroma cacao]
14 Hb_000976_340 0.1130851507 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_002097_210 0.1175578499 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000098_250 0.1196518335 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
17 Hb_033312_090 0.1200517697 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
18 Hb_002475_010 0.1200603698 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
19 Hb_002890_320 0.1211681448 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
20 Hb_013720_010 0.121555676 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_008040_060 Hb_008040_060 Hb_002529_080 Hb_002529_080 Hb_008040_060--Hb_002529_080 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_003914_050 Hb_003914_050 Hb_008040_060--Hb_003914_050 Hb_000027_060 Hb_000027_060 Hb_008040_060--Hb_000027_060 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030 Hb_002529_080--Hb_008667_030 Hb_000094_010 Hb_000094_010 Hb_002529_080--Hb_000094_010 Hb_002529_080--Hb_000000_070 Hb_000098_250 Hb_000098_250 Hb_002529_080--Hb_000098_250 Hb_002529_080--Hb_003914_050 Hb_007007_090 Hb_007007_090 Hb_001248_170--Hb_007007_090 Hb_002370_060 Hb_002370_060 Hb_001248_170--Hb_002370_060 Hb_000976_340 Hb_000976_340 Hb_001248_170--Hb_000976_340 Hb_006573_280 Hb_006573_280 Hb_001248_170--Hb_006573_280 Hb_001248_170--Hb_002529_080 Hb_003914_050--Hb_000094_010 Hb_003914_050--Hb_008667_030 Hb_012098_180 Hb_012098_180 Hb_003914_050--Hb_012098_180 Hb_003914_050--Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_000027_060--Hb_001534_150 Hb_000331_710 Hb_000331_710 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000705_130 Hb_000705_130 Hb_000027_060--Hb_000705_130 Hb_006615_180 Hb_006615_180 Hb_000000_070--Hb_006615_180 Hb_001568_120 Hb_001568_120 Hb_000000_070--Hb_001568_120 Hb_117127_010 Hb_117127_010 Hb_000000_070--Hb_117127_010 Hb_000000_070--Hb_008667_030 Hb_004122_020 Hb_004122_020 Hb_000000_070--Hb_004122_020 Hb_008667_030--Hb_117127_010 Hb_008667_030--Hb_000098_250 Hb_006698_020 Hb_006698_020 Hb_008667_030--Hb_006698_020 Hb_000338_030 Hb_000338_030 Hb_008667_030--Hb_000338_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 24.2372 6.49445 7.62972 0.11376 0.130301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.67389 5.56379

CAGE analysis