Hb_002370_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2370: 55709-56668
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19190g
description POPTRDRAFT_766665; hypothetical protein
nr
ID XP_011045274.1
description PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID B9HLR9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19190g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002370_060 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
2 Hb_000054_140 0.0737490576 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
3 Hb_177215_020 0.0870348401 - - acc synthase, putative [Ricinus communis]
4 Hb_000836_220 0.0874146827 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_001248_170 0.0915834466 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
6 Hb_006573_280 0.0936454349 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
7 Hb_001198_160 0.1070761778 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_002097_130 0.1189412327 - - tonoplast intrinsic protein [Hevea brasiliensis]
9 Hb_004837_110 0.12088534 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
10 Hb_004166_020 0.1211610468 - - -
11 Hb_002529_080 0.1223527652 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
12 Hb_003656_170 0.124286701 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
13 Hb_000589_330 0.1274671073 - - kinase, putative [Ricinus communis]
14 Hb_000391_060 0.1301851596 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
15 Hb_000000_070 0.131191455 - - allene oxide synthase [Hevea brasiliensis]
16 Hb_001123_170 0.1329892699 - - conserved hypothetical protein [Ricinus communis]
17 Hb_033187_020 0.1338086185 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
18 Hb_000237_070 0.1347180803 - - Purple acid phosphatase precursor, putative [Ricinus communis]
19 Hb_008040_060 0.1356384729 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
20 Hb_028928_020 0.1363220992 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]

Gene co-expression network

sample Hb_002370_060 Hb_002370_060 Hb_000054_140 Hb_000054_140 Hb_002370_060--Hb_000054_140 Hb_177215_020 Hb_177215_020 Hb_002370_060--Hb_177215_020 Hb_000836_220 Hb_000836_220 Hb_002370_060--Hb_000836_220 Hb_001248_170 Hb_001248_170 Hb_002370_060--Hb_001248_170 Hb_006573_280 Hb_006573_280 Hb_002370_060--Hb_006573_280 Hb_001198_160 Hb_001198_160 Hb_002370_060--Hb_001198_160 Hb_000054_140--Hb_006573_280 Hb_004837_110 Hb_004837_110 Hb_000054_140--Hb_004837_110 Hb_000054_140--Hb_001198_160 Hb_000054_140--Hb_000836_220 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_177215_020--Hb_001198_160 Hb_177215_020--Hb_000836_220 Hb_177215_020--Hb_000054_140 Hb_138086_010 Hb_138086_010 Hb_177215_020--Hb_138086_010 Hb_028841_010 Hb_028841_010 Hb_177215_020--Hb_028841_010 Hb_000836_220--Hb_001198_160 Hb_000836_220--Hb_006573_280 Hb_000028_330 Hb_000028_330 Hb_000836_220--Hb_000028_330 Hb_007007_090 Hb_007007_090 Hb_001248_170--Hb_007007_090 Hb_008040_060 Hb_008040_060 Hb_001248_170--Hb_008040_060 Hb_000976_340 Hb_000976_340 Hb_001248_170--Hb_000976_340 Hb_001248_170--Hb_006573_280 Hb_002529_080 Hb_002529_080 Hb_001248_170--Hb_002529_080 Hb_001677_120 Hb_001677_120 Hb_006573_280--Hb_001677_120 Hb_004112_050 Hb_004112_050 Hb_006573_280--Hb_004112_050 Hb_001198_160--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_001198_160--Hb_001610_070 Hb_001198_160--Hb_138086_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.8096 6.73722 8.48835 0.0685083 0.0260718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0838892 0 3.71472 2.82315

CAGE analysis