Hb_177215_020

Information

Type -
Description -
Location Contig177215: 34212-36609
Sequence    

Annotation

kegg
ID rcu:RCOM_1688460
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_002509858.1
description acc synthase, putative [Ricinus communis]
swissprot
ID P31531
description 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1
trembl
ID B9RCH4
description 1-aminocyclopropane-1-carboxylate synthase OS=Ricinus communis GN=ACS7 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177215_020 0.0 - - acc synthase, putative [Ricinus communis]
2 Hb_001198_160 0.0782049558 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_002370_060 0.0870348401 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
4 Hb_000836_220 0.0926809039 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_000054_140 0.1036468205 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
6 Hb_138086_010 0.1106800448 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
7 Hb_028841_010 0.1135760599 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
8 Hb_010573_040 0.1142173648 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
9 Hb_002676_110 0.1202330655 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
10 Hb_000836_320 0.1234002869 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_004785_160 0.126183462 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
12 Hb_000028_330 0.1276758564 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
13 Hb_001619_020 0.1282300598 - - LRR receptor-like kinase family protein [Medicago truncatula]
14 Hb_000110_030 0.1287498125 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
15 Hb_009476_070 0.1294991897 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
16 Hb_001610_070 0.1348111653 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
17 Hb_001141_210 0.1356136372 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
18 Hb_000087_200 0.1381743436 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
19 Hb_000031_160 0.1415002902 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
20 Hb_005867_030 0.1428690126 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]

Gene co-expression network

sample Hb_177215_020 Hb_177215_020 Hb_001198_160 Hb_001198_160 Hb_177215_020--Hb_001198_160 Hb_002370_060 Hb_002370_060 Hb_177215_020--Hb_002370_060 Hb_000836_220 Hb_000836_220 Hb_177215_020--Hb_000836_220 Hb_000054_140 Hb_000054_140 Hb_177215_020--Hb_000054_140 Hb_138086_010 Hb_138086_010 Hb_177215_020--Hb_138086_010 Hb_028841_010 Hb_028841_010 Hb_177215_020--Hb_028841_010 Hb_000028_330 Hb_000028_330 Hb_001198_160--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_001198_160--Hb_001610_070 Hb_001198_160--Hb_000836_220 Hb_001198_160--Hb_138086_010 Hb_001198_160--Hb_000054_140 Hb_002370_060--Hb_000054_140 Hb_002370_060--Hb_000836_220 Hb_001248_170 Hb_001248_170 Hb_002370_060--Hb_001248_170 Hb_006573_280 Hb_006573_280 Hb_002370_060--Hb_006573_280 Hb_002370_060--Hb_001198_160 Hb_000836_220--Hb_000054_140 Hb_000836_220--Hb_006573_280 Hb_000836_220--Hb_000028_330 Hb_000054_140--Hb_006573_280 Hb_004837_110 Hb_004837_110 Hb_000054_140--Hb_004837_110 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_008406_070 Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_009476_070 Hb_009476_070 Hb_138086_010--Hb_009476_070 Hb_000152_170 Hb_000152_170 Hb_138086_010--Hb_000152_170 Hb_070634_010 Hb_070634_010 Hb_138086_010--Hb_070634_010 Hb_000365_180 Hb_000365_180 Hb_138086_010--Hb_000365_180 Hb_004631_100 Hb_004631_100 Hb_028841_010--Hb_004631_100 Hb_002325_050 Hb_002325_050 Hb_028841_010--Hb_002325_050 Hb_002676_110 Hb_002676_110 Hb_028841_010--Hb_002676_110 Hb_003849_200 Hb_003849_200 Hb_028841_010--Hb_003849_200 Hb_002888_100 Hb_002888_100 Hb_028841_010--Hb_002888_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.19968 1.49562 1.60751 0 0.0144174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.675572 0.321217

CAGE analysis