Hb_000152_170

Information

Type -
Description -
Location Contig152: 127217-137764
Sequence    

Annotation

kegg
ID rcu:RCOM_1498620
description Xyloglucan galactosyltransferase KATAMARI1, putative
nr
ID XP_012090368.1
description PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
swissprot
ID Q8H038
description Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1
trembl
ID A0A067JEW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26203 PE=4 SV=1
Gene Ontology
ID GO:0005794
description xyloglucan galactosyltransferase katamari1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12956: 135583-137964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_170 0.0 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
2 Hb_138086_010 0.1015629882 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_000365_180 0.1155990843 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
4 Hb_000563_630 0.1210585129 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
5 Hb_000163_180 0.1244333553 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
6 Hb_028841_010 0.1246853677 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
7 Hb_008406_070 0.1256635118 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
8 Hb_004116_150 0.1261176122 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000071_090 0.1283119181 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
10 Hb_000210_160 0.1315208035 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_008806_040 0.1318690506 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_009476_070 0.1319073355 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
13 Hb_001989_070 0.132077652 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
14 Hb_006120_210 0.1347823042 - - gibberellin 20-oxidase, putative [Ricinus communis]
15 Hb_005542_030 0.1381746145 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
16 Hb_008749_010 0.1386496094 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
17 Hb_003747_250 0.1390057043 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
18 Hb_164926_050 0.1420270148 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
19 Hb_001247_160 0.1433910333 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_001141_210 0.143864562 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_170 Hb_000152_170 Hb_138086_010 Hb_138086_010 Hb_000152_170--Hb_138086_010 Hb_000365_180 Hb_000365_180 Hb_000152_170--Hb_000365_180 Hb_000563_630 Hb_000563_630 Hb_000152_170--Hb_000563_630 Hb_000163_180 Hb_000163_180 Hb_000152_170--Hb_000163_180 Hb_028841_010 Hb_028841_010 Hb_000152_170--Hb_028841_010 Hb_008406_070 Hb_008406_070 Hb_000152_170--Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_009476_070 Hb_009476_070 Hb_138086_010--Hb_009476_070 Hb_070634_010 Hb_070634_010 Hb_138086_010--Hb_070634_010 Hb_138086_010--Hb_000365_180 Hb_000365_180--Hb_009476_070 Hb_000365_180--Hb_000163_180 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_008749_010 Hb_008749_010 Hb_000365_180--Hb_008749_010 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020 Hb_034507_090 Hb_034507_090 Hb_000563_630--Hb_034507_090 Hb_000210_160 Hb_000210_160 Hb_000563_630--Hb_000210_160 Hb_000742_130 Hb_000742_130 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_142026_010 Hb_142026_010 Hb_000163_180--Hb_142026_010 Hb_000163_180--Hb_008749_010 Hb_030982_050 Hb_030982_050 Hb_000163_180--Hb_030982_050 Hb_003092_020 Hb_003092_020 Hb_000163_180--Hb_003092_020 Hb_106089_010 Hb_106089_010 Hb_000163_180--Hb_106089_010 Hb_177215_020 Hb_177215_020 Hb_028841_010--Hb_177215_020 Hb_004631_100 Hb_004631_100 Hb_028841_010--Hb_004631_100 Hb_002325_050 Hb_002325_050 Hb_028841_010--Hb_002325_050 Hb_002676_110 Hb_002676_110 Hb_028841_010--Hb_002676_110 Hb_028841_010--Hb_003849_200 Hb_028841_010--Hb_002888_100 Hb_002374_030 Hb_002374_030 Hb_008406_070--Hb_002374_030 Hb_000071_090 Hb_000071_090 Hb_008406_070--Hb_000071_090 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_001160_050 Hb_001160_050 Hb_008406_070--Hb_001160_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0465709 4.39205 5.17581 4.97227 0.0267645 0.0948941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0634799 0.116547 0.189725 1.80075 1.4098

CAGE analysis