Hb_008406_070

Information

Type -
Description -
Location Contig8406: 56907-60291
Sequence    

Annotation

kegg
ID rcu:RCOM_1173310
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012088240.1
description PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
swissprot
ID Q93YW5
description Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=2 SV=1
trembl
ID A0A067JMP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25755 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 58

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60107: 56778-60149 , PASA_asmbl_60108: 56778-60149
cDNA
(Sanger)
(ID:Location)		 011_L08.ab1: 57522-60148 , 037_K24.ab1: 57593-60149 , 046_O08.ab1: 57596-60149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_070 0.0 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
2 Hb_002374_030 0.0791330971 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
3 Hb_000071_090 0.0830435072 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
4 Hb_138086_010 0.087967389 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
5 Hb_000878_090 0.1088380277 - - sucrose-phosphatase family protein [Populus trichocarpa]
6 Hb_011915_020 0.1089863724 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
7 Hb_001160_050 0.1144118482 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
8 Hb_000836_420 0.1181695755 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_000454_080 0.1192336171 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
10 Hb_008749_010 0.1195512942 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
11 Hb_009907_020 0.1211382618 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
12 Hb_001254_020 0.1218273097 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
13 Hb_001610_070 0.1239606071 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
14 Hb_001430_010 0.1255371148 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
15 Hb_000152_170 0.1256635118 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
16 Hb_000032_090 0.1260075106 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000985_140 0.1272165578 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
18 Hb_007904_290 0.1280044659 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
19 Hb_189208_060 0.1288542249 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
20 Hb_003747_250 0.1315674371 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_008406_070 Hb_008406_070 Hb_002374_030 Hb_002374_030 Hb_008406_070--Hb_002374_030 Hb_000071_090 Hb_000071_090 Hb_008406_070--Hb_000071_090 Hb_138086_010 Hb_138086_010 Hb_008406_070--Hb_138086_010 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_001160_050 Hb_001160_050 Hb_008406_070--Hb_001160_050 Hb_002374_030--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_002374_030--Hb_189208_060 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_000836_420 Hb_000836_420 Hb_002374_030--Hb_000836_420 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_001769_120 Hb_001769_120 Hb_000071_090--Hb_001769_120 Hb_000071_090--Hb_189208_060 Hb_000985_140 Hb_000985_140 Hb_000071_090--Hb_000985_140 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_009476_070 Hb_009476_070 Hb_138086_010--Hb_009476_070 Hb_000152_170 Hb_000152_170 Hb_138086_010--Hb_000152_170 Hb_070634_010 Hb_070634_010 Hb_138086_010--Hb_070634_010 Hb_000365_180 Hb_000365_180 Hb_138086_010--Hb_000365_180 Hb_009907_020 Hb_009907_020 Hb_000878_090--Hb_009907_020 Hb_000878_090--Hb_001160_050 Hb_008749_010 Hb_008749_010 Hb_000878_090--Hb_008749_010 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000152_410 Hb_000152_410 Hb_000878_090--Hb_000152_410 Hb_001610_070 Hb_001610_070 Hb_011915_020--Hb_001610_070 Hb_011915_020--Hb_002374_030 Hb_029622_090 Hb_029622_090 Hb_011915_020--Hb_029622_090 Hb_011915_020--Hb_001198_160 Hb_010721_010 Hb_010721_010 Hb_011915_020--Hb_010721_010 Hb_002048_070 Hb_002048_070 Hb_011915_020--Hb_002048_070 Hb_001160_050--Hb_000836_420 Hb_001160_050--Hb_189208_060 Hb_001160_050--Hb_009907_020 Hb_001160_050--Hb_000152_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.034587 124.315 177.507 123.405 0.192672 0.294532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31922 3.34489 0.82754 23.306 40.3566

CAGE analysis