Hb_009907_020

Information

Type -
Description -
Location Contig9907: 74336-78652
Sequence    

Annotation

kegg
ID cit:102625973
description uncharacterized LOC102625973
nr
ID XP_006451702.1
description hypothetical protein CICLE_v10009323mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UFS3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009323mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64768: 74429-78647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009907_020 0.0 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
2 Hb_000878_090 0.0747840799 - - sucrose-phosphatase family protein [Populus trichocarpa]
3 Hb_001160_050 0.0907488376 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
4 Hb_002311_500 0.0909183281 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
5 Hb_000771_040 0.0976408933 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
6 Hb_001769_120 0.1071578755 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
7 Hb_008749_010 0.1130513337 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
8 Hb_001776_130 0.1165749373 - - metallothionein [Hevea brasiliensis]
9 Hb_000152_410 0.117581417 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_002374_030 0.1197326309 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
11 Hb_008406_070 0.1211382618 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
12 Hb_002995_010 0.1230732242 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
13 Hb_009476_070 0.1231121783 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
14 Hb_000199_040 0.1235824446 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_004567_070 0.1249477057 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000002_370 0.1262626605 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
17 Hb_189208_060 0.129237077 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
18 Hb_000836_420 0.1301813722 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_015037_010 0.1314346235 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
20 Hb_000914_140 0.1328251993 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009907_020 Hb_009907_020 Hb_000878_090 Hb_000878_090 Hb_009907_020--Hb_000878_090 Hb_001160_050 Hb_001160_050 Hb_009907_020--Hb_001160_050 Hb_002311_500 Hb_002311_500 Hb_009907_020--Hb_002311_500 Hb_000771_040 Hb_000771_040 Hb_009907_020--Hb_000771_040 Hb_001769_120 Hb_001769_120 Hb_009907_020--Hb_001769_120 Hb_008749_010 Hb_008749_010 Hb_009907_020--Hb_008749_010 Hb_000878_090--Hb_001160_050 Hb_000878_090--Hb_008749_010 Hb_002374_030 Hb_002374_030 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000152_410 Hb_000152_410 Hb_000878_090--Hb_000152_410 Hb_000836_420 Hb_000836_420 Hb_001160_050--Hb_000836_420 Hb_001160_050--Hb_002374_030 Hb_189208_060 Hb_189208_060 Hb_001160_050--Hb_189208_060 Hb_001160_050--Hb_000152_410 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_000200_270 Hb_000200_270 Hb_002311_500--Hb_000200_270 Hb_001581_040 Hb_001581_040 Hb_000771_040--Hb_001581_040 Hb_001971_030 Hb_001971_030 Hb_000771_040--Hb_001971_030 Hb_002774_180 Hb_002774_180 Hb_000771_040--Hb_002774_180 Hb_000111_240 Hb_000111_240 Hb_000771_040--Hb_000111_240 Hb_160653_010 Hb_160653_010 Hb_000771_040--Hb_160653_010 Hb_001769_120--Hb_000152_410 Hb_000071_090 Hb_000071_090 Hb_001769_120--Hb_000071_090 Hb_028487_040 Hb_028487_040 Hb_001769_120--Hb_028487_040 Hb_001769_120--Hb_001160_050 Hb_001769_120--Hb_000836_420 Hb_000365_180 Hb_000365_180 Hb_008749_010--Hb_000365_180 Hb_003747_250 Hb_003747_250 Hb_008749_010--Hb_003747_250 Hb_000163_180 Hb_000163_180 Hb_008749_010--Hb_000163_180 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_001989_070 Hb_001989_070 Hb_008749_010--Hb_001989_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0253304 7.5964 16.6485 7.75155 0.0491736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.36002 3.24585

CAGE analysis