Hb_002774_180

Information

Type -
Description -
Location Contig2774: 148144-150463
Sequence    

Annotation

kegg
ID rcu:RCOM_1034650
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_002513897.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q67XC9
description Probable trehalose-phosphate phosphatase D OS=Arabidopsis thaliana GN=TPPD PE=2 SV=1
trembl
ID B9RJH8
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_1034650 PE=3 SV=1
Gene Ontology
ID GO:0004805
description probable trehalose-phosphate phosphatase d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_180 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_002973_070 0.0995307963 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
3 Hb_000018_090 0.1031437364 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_001141_210 0.1035549976 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
5 Hb_000771_040 0.1093431379 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
6 Hb_009476_070 0.1121116574 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
7 Hb_004785_160 0.1154005724 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
8 Hb_008806_040 0.1157038931 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_001971_030 0.1228707561 - - PREDICTED: exonuclease 1 [Jatropha curcas]
10 Hb_001989_040 0.1238353542 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
11 Hb_000482_070 0.1238900521 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
12 Hb_070634_010 0.1252657299 - - TMV resistance protein N, putative [Ricinus communis]
13 Hb_138086_010 0.1323319748 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_042098_010 0.1325049102 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
15 Hb_001619_020 0.1329557376 - - LRR receptor-like kinase family protein [Medicago truncatula]
16 Hb_002871_050 0.1340137327 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
17 Hb_000509_090 0.1369132403 - - Reticuline oxidase precursor, putative [Ricinus communis]
18 Hb_007747_160 0.1439895867 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
19 Hb_001581_040 0.1440137791 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_000031_160 0.1454648264 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_180 Hb_002774_180 Hb_002973_070 Hb_002973_070 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_000771_040 Hb_000771_040 Hb_002774_180--Hb_000771_040 Hb_009476_070 Hb_009476_070 Hb_002774_180--Hb_009476_070 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160 Hb_002973_070--Hb_004785_160 Hb_002973_070--Hb_001141_210 Hb_001971_030 Hb_001971_030 Hb_002973_070--Hb_001971_030 Hb_000031_160 Hb_000031_160 Hb_002973_070--Hb_000031_160 Hb_004544_010 Hb_004544_010 Hb_002973_070--Hb_004544_010 Hb_000482_070 Hb_000482_070 Hb_000018_090--Hb_000482_070 Hb_000567_060 Hb_000567_060 Hb_000018_090--Hb_000567_060 Hb_002871_050 Hb_002871_050 Hb_000018_090--Hb_002871_050 Hb_137272_010 Hb_137272_010 Hb_000018_090--Hb_137272_010 Hb_001776_130 Hb_001776_130 Hb_000018_090--Hb_001776_130 Hb_001141_210--Hb_004785_160 Hb_001141_210--Hb_000031_160 Hb_138086_010 Hb_138086_010 Hb_001141_210--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_001141_210--Hb_070634_010 Hb_001581_040 Hb_001581_040 Hb_000771_040--Hb_001581_040 Hb_009907_020 Hb_009907_020 Hb_000771_040--Hb_009907_020 Hb_000771_040--Hb_001971_030 Hb_000111_240 Hb_000111_240 Hb_000771_040--Hb_000111_240 Hb_160653_010 Hb_160653_010 Hb_000771_040--Hb_160653_010 Hb_000365_180 Hb_000365_180 Hb_009476_070--Hb_000365_180 Hb_009476_070--Hb_138086_010 Hb_008806_040 Hb_008806_040 Hb_009476_070--Hb_008806_040 Hb_008749_010 Hb_008749_010 Hb_009476_070--Hb_008749_010 Hb_005463_070 Hb_005463_070 Hb_009476_070--Hb_005463_070 Hb_000110_030 Hb_000110_030 Hb_004785_160--Hb_000110_030 Hb_004785_160--Hb_004544_010 Hb_004785_160--Hb_000031_160 Hb_043522_010 Hb_043522_010 Hb_004785_160--Hb_043522_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.80905 9.49096 5.18039 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0304277 0 3.50789 0.946634

CAGE analysis