Hb_000110_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig110: 37682-38254
Sequence    

Annotation

kegg
ID rcu:RCOM_0294100
description zinc finger protein, putative
nr
ID XP_002533000.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SLD4
description Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1
trembl
ID B9T431
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0294100 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein zat11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_030 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_004785_160 0.0752510171 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
3 Hb_010573_040 0.1022614426 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
4 Hb_000598_020 0.1083476545 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
5 Hb_000031_160 0.116076596 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
6 Hb_001141_210 0.1253382247 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
7 Hb_177215_020 0.1287498125 - - acc synthase, putative [Ricinus communis]
8 Hb_041145_010 0.133298287 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
9 Hb_000417_120 0.1348261539 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
10 Hb_004544_010 0.1360912074 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
11 Hb_000771_030 0.1363545542 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
12 Hb_043522_010 0.1408416336 - - -
13 Hb_036356_010 0.1416902852 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_002973_070 0.1455453498 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
15 Hb_005628_050 0.1505949715 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
16 Hb_000552_090 0.1515109278 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
17 Hb_001619_020 0.1555375912 - - LRR receptor-like kinase family protein [Medicago truncatula]
18 Hb_131662_010 0.1598806174 - - Insulin-degrading enzyme, putative [Ricinus communis]
19 Hb_168068_010 0.161523282 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_002774_180 0.1635618687 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000110_030 Hb_000110_030 Hb_004785_160 Hb_004785_160 Hb_000110_030--Hb_004785_160 Hb_010573_040 Hb_010573_040 Hb_000110_030--Hb_010573_040 Hb_000598_020 Hb_000598_020 Hb_000110_030--Hb_000598_020 Hb_000031_160 Hb_000031_160 Hb_000110_030--Hb_000031_160 Hb_001141_210 Hb_001141_210 Hb_000110_030--Hb_001141_210 Hb_177215_020 Hb_177215_020 Hb_000110_030--Hb_177215_020 Hb_002973_070 Hb_002973_070 Hb_004785_160--Hb_002973_070 Hb_004544_010 Hb_004544_010 Hb_004785_160--Hb_004544_010 Hb_004785_160--Hb_001141_210 Hb_004785_160--Hb_000031_160 Hb_043522_010 Hb_043522_010 Hb_004785_160--Hb_043522_010 Hb_131662_010 Hb_131662_010 Hb_010573_040--Hb_131662_010 Hb_008959_050 Hb_008959_050 Hb_010573_040--Hb_008959_050 Hb_010573_040--Hb_177215_020 Hb_036356_010 Hb_036356_010 Hb_010573_040--Hb_036356_010 Hb_000771_030 Hb_000771_030 Hb_010573_040--Hb_000771_030 Hb_000417_120 Hb_000417_120 Hb_000598_020--Hb_000417_120 Hb_000075_110 Hb_000075_110 Hb_000598_020--Hb_000075_110 Hb_000598_020--Hb_000771_030 Hb_165404_010 Hb_165404_010 Hb_000598_020--Hb_165404_010 Hb_005628_050 Hb_005628_050 Hb_000598_020--Hb_005628_050 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_000031_160--Hb_005628_050 Hb_000031_160--Hb_001141_210 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230 Hb_002774_180 Hb_002774_180 Hb_001141_210--Hb_002774_180 Hb_001141_210--Hb_002973_070 Hb_138086_010 Hb_138086_010 Hb_001141_210--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_001141_210--Hb_070634_010 Hb_001198_160 Hb_001198_160 Hb_177215_020--Hb_001198_160 Hb_002370_060 Hb_002370_060 Hb_177215_020--Hb_002370_060 Hb_000836_220 Hb_000836_220 Hb_177215_020--Hb_000836_220 Hb_000054_140 Hb_000054_140 Hb_177215_020--Hb_000054_140 Hb_177215_020--Hb_138086_010 Hb_028841_010 Hb_028841_010 Hb_177215_020--Hb_028841_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.27425 5.07123 4.40019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108219 0 0 3.39275 0.326633

CAGE analysis