Hb_000054_140

Information

Type -
Description -
Location Contig54: 209502-214436
Sequence    

Annotation

kegg
ID rcu:RCOM_1252860
description hypothetical protein
nr
ID XP_012091851.1
description PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
swissprot
ID Q9C7N2
description MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1
trembl
ID A0A067JEG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21629 PE=4 SV=1
Gene Ontology
ID GO:0005622
description macpf domain-containing protein cad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000054_140 0.0 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
2 Hb_002370_060 0.0737490576 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
3 Hb_006573_280 0.0825242045 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
4 Hb_004837_110 0.0856727363 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
5 Hb_001198_160 0.0919222604 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_000836_220 0.0921648639 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_033187_020 0.0937474022 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
8 Hb_004393_030 0.0988335818 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
9 Hb_028928_020 0.1008532163 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
10 Hb_177215_020 0.1036468205 - - acc synthase, putative [Ricinus communis]
11 Hb_002097_130 0.1121458869 - - tonoplast intrinsic protein [Hevea brasiliensis]
12 Hb_001248_170 0.1135444667 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
13 Hb_005867_030 0.1144440284 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
14 Hb_007102_010 0.11460192 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
15 Hb_000032_090 0.1169915049 - - conserved hypothetical protein [Ricinus communis]
16 Hb_024650_010 0.1170885938 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
17 Hb_006736_040 0.1179174538 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
18 Hb_138086_010 0.1191816322 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_000985_140 0.1215206363 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
20 Hb_001610_070 0.1220370304 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]

Gene co-expression network

sample Hb_000054_140 Hb_000054_140 Hb_002370_060 Hb_002370_060 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_004837_110 Hb_004837_110 Hb_000054_140--Hb_004837_110 Hb_001198_160 Hb_001198_160 Hb_000054_140--Hb_001198_160 Hb_000836_220 Hb_000836_220 Hb_000054_140--Hb_000836_220 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_177215_020 Hb_177215_020 Hb_002370_060--Hb_177215_020 Hb_002370_060--Hb_000836_220 Hb_001248_170 Hb_001248_170 Hb_002370_060--Hb_001248_170 Hb_002370_060--Hb_006573_280 Hb_002370_060--Hb_001198_160 Hb_001677_120 Hb_001677_120 Hb_006573_280--Hb_001677_120 Hb_006573_280--Hb_001248_170 Hb_004112_050 Hb_004112_050 Hb_006573_280--Hb_004112_050 Hb_006573_280--Hb_000836_220 Hb_007102_010 Hb_007102_010 Hb_004837_110--Hb_007102_010 Hb_002890_320 Hb_002890_320 Hb_004837_110--Hb_002890_320 Hb_001821_050 Hb_001821_050 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_002375_080 Hb_002375_080 Hb_004837_110--Hb_002375_080 Hb_000028_330 Hb_000028_330 Hb_001198_160--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_001198_160--Hb_001610_070 Hb_001198_160--Hb_000836_220 Hb_001198_160--Hb_177215_020 Hb_138086_010 Hb_138086_010 Hb_001198_160--Hb_138086_010 Hb_000836_220--Hb_177215_020 Hb_000836_220--Hb_000028_330 Hb_033187_020--Hb_028928_020 Hb_002097_130 Hb_002097_130 Hb_033187_020--Hb_002097_130 Hb_006736_040 Hb_006736_040 Hb_033187_020--Hb_006736_040 Hb_000365_180 Hb_000365_180 Hb_033187_020--Hb_000365_180 Hb_024650_010 Hb_024650_010 Hb_033187_020--Hb_024650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.0372 6.26402 6.2435 0 0.0354089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0542652 0 2.15926 2.94205

CAGE analysis