Hb_006736_040

Information

Type -
Description -
Location Contig6736: 62488-63453
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05780g
description hypothetical protein
nr
ID XP_011039449.1
description PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
swissprot
ID P52408
description Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1
trembl
ID U5FNT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05780g PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta- basic isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006736_040 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
2 Hb_024650_010 0.05572367 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
3 Hb_003435_040 0.0572843133 - - tonoplast intrinsic protein [Hevea brasiliensis]
4 Hb_000028_330 0.0769298323 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
5 Hb_001610_070 0.0836013952 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
6 Hb_001013_080 0.0937510927 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_001518_030 0.0956770364 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_001198_160 0.0963198682 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_004634_030 0.0970467872 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028928_020 0.0994349333 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
11 Hb_033187_020 0.1002094503 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
12 Hb_003849_200 0.1018120871 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
13 Hb_002097_130 0.1069127328 - - tonoplast intrinsic protein [Hevea brasiliensis]
14 Hb_004324_100 0.1081657213 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_026048_030 0.1100406981 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000054_140 0.1179174538 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
17 Hb_002739_160 0.1189279791 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_000991_080 0.1200595614 - - kinase, putative [Ricinus communis]
19 Hb_006573_280 0.1206001253 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
20 Hb_001913_030 0.1208699686 - - ankyrin repeat protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_006736_040 Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_006736_040--Hb_024650_010 Hb_003435_040 Hb_003435_040 Hb_006736_040--Hb_003435_040 Hb_000028_330 Hb_000028_330 Hb_006736_040--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_006736_040--Hb_001610_070 Hb_001013_080 Hb_001013_080 Hb_006736_040--Hb_001013_080 Hb_001518_030 Hb_001518_030 Hb_006736_040--Hb_001518_030 Hb_024650_010--Hb_003435_040 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_003849_200 Hb_003849_200 Hb_003435_040--Hb_003849_200 Hb_003435_040--Hb_001518_030 Hb_001198_160 Hb_001198_160 Hb_000028_330--Hb_001198_160 Hb_000028_330--Hb_001610_070 Hb_000028_330--Hb_001518_030 Hb_029622_090 Hb_029622_090 Hb_000028_330--Hb_029622_090 Hb_000028_330--Hb_026048_030 Hb_001610_070--Hb_001198_160 Hb_011915_020 Hb_011915_020 Hb_001610_070--Hb_011915_020 Hb_001610_070--Hb_024650_010 Hb_000836_220 Hb_000836_220 Hb_001610_070--Hb_000836_220 Hb_001913_030 Hb_001913_030 Hb_001013_080--Hb_001913_030 Hb_001013_080--Hb_000991_080 Hb_001013_080--Hb_003849_200 Hb_000162_070 Hb_000162_070 Hb_001013_080--Hb_000162_070 Hb_008725_020 Hb_008725_020 Hb_001013_080--Hb_008725_020 Hb_001518_030--Hb_026048_030 Hb_001310_080 Hb_001310_080 Hb_001518_030--Hb_001310_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.4901 6.68765 11.5347 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529169 0 0 1.99334 3.73661

CAGE analysis