Hb_026048_030

Information

Type -
Description -
Location Contig26048: 58337-58999
Sequence    

Annotation

kegg
ID rcu:RCOM_1689330
description hypothetical protein
nr
ID XP_002509874.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026048_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001518_030 0.050585486 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_001310_080 0.0675242807 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
4 Hb_113396_010 0.0791389563 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000028_330 0.084648359 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
6 Hb_024650_010 0.0869499033 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
7 Hb_000365_190 0.0985460277 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
8 Hb_002218_080 0.1055265496 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_008352_020 0.1078839557 - - hypothetical protein [Cecembia lonarensis]
10 Hb_003435_040 0.1095409749 - - tonoplast intrinsic protein [Hevea brasiliensis]
11 Hb_006736_040 0.1100406981 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
12 Hb_155015_020 0.1118393634 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_002811_320 0.1137539353 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_005618_010 0.1164970614 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
15 Hb_004109_110 0.1181930091 - - dioxygenase family protein [Populus trichocarpa]
16 Hb_000024_020 0.1184088818 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
17 Hb_002725_080 0.1245901936 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_029622_090 0.1257356746 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
19 Hb_001610_070 0.1258054511 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
20 Hb_000836_220 0.1258343804 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_026048_030 Hb_026048_030 Hb_001518_030 Hb_001518_030 Hb_026048_030--Hb_001518_030 Hb_001310_080 Hb_001310_080 Hb_026048_030--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_026048_030--Hb_113396_010 Hb_000028_330 Hb_000028_330 Hb_026048_030--Hb_000028_330 Hb_024650_010 Hb_024650_010 Hb_026048_030--Hb_024650_010 Hb_000365_190 Hb_000365_190 Hb_026048_030--Hb_000365_190 Hb_001518_030--Hb_024650_010 Hb_001518_030--Hb_000028_330 Hb_003435_040 Hb_003435_040 Hb_001518_030--Hb_003435_040 Hb_001518_030--Hb_001310_080 Hb_006736_040 Hb_006736_040 Hb_001518_030--Hb_006736_040 Hb_001310_080--Hb_113396_010 Hb_002218_080 Hb_002218_080 Hb_001310_080--Hb_002218_080 Hb_004112_050 Hb_004112_050 Hb_001310_080--Hb_004112_050 Hb_000024_020 Hb_000024_020 Hb_001310_080--Hb_000024_020 Hb_113396_010--Hb_002218_080 Hb_113396_010--Hb_000365_190 Hb_113396_010--Hb_000024_020 Hb_113396_010--Hb_004112_050 Hb_001198_160 Hb_001198_160 Hb_000028_330--Hb_001198_160 Hb_001610_070 Hb_001610_070 Hb_000028_330--Hb_001610_070 Hb_000028_330--Hb_006736_040 Hb_029622_090 Hb_029622_090 Hb_000028_330--Hb_029622_090 Hb_024650_010--Hb_006736_040 Hb_024650_010--Hb_003435_040 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080 Hb_000742_260 Hb_000742_260 Hb_000365_190--Hb_000742_260 Hb_000365_190--Hb_001310_080 Hb_011101_010 Hb_011101_010 Hb_000365_190--Hb_011101_010 Hb_004586_230 Hb_004586_230 Hb_000365_190--Hb_004586_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32325 0.556039 1.19574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0840013 0.269632

CAGE analysis