Hb_003435_040

Information

Type -
Description -
Location Contig3435: 71033-72114
Sequence    

Annotation

kegg
ID egr:104425948
description aquaporin TIP1-1
nr
ID ACX37451.1
description tonoplast intrinsic protein [Hevea brasiliensis]
swissprot
ID P25818
description Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
trembl
ID C9WSP9
description Tonoplast intrinsic protein OS=Hevea brasiliensis GN=TIP1;1 PE=2 SV=1
Gene Ontology
ID GO:0016020
description aquaporin tip1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35884: 70947-71947 , PASA_asmbl_35885: 72110-72515
cDNA
(Sanger)
(ID:Location)		 030_D06.ab1: 70970-71691 , 032_A18.ab1: 70948-71719 , 034_G24.ab1: 70948-71856 , 047_P21.ab1: 70948-71820 , 050_I05.ab1: 70948-71556

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003435_040 0.0 - - tonoplast intrinsic protein [Hevea brasiliensis]
2 Hb_006736_040 0.0572843133 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
3 Hb_024650_010 0.0679554913 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
4 Hb_001013_080 0.0798867166 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_000991_080 0.083811085 - - kinase, putative [Ricinus communis]
6 Hb_003849_200 0.085519816 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
7 Hb_001518_030 0.0902721235 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_000028_330 0.0921928518 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
9 Hb_002739_160 0.1026775539 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_002097_130 0.1040033794 - - tonoplast intrinsic protein [Hevea brasiliensis]
11 Hb_008725_020 0.1048931111 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
12 Hb_004634_030 0.1058567286 - - conserved hypothetical protein [Ricinus communis]
13 Hb_026048_030 0.1095409749 - - conserved hypothetical protein [Ricinus communis]
14 Hb_153180_010 0.1106304162 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
15 Hb_004324_100 0.1121270701 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_010174_200 0.112966758 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
17 Hb_173107_020 0.1133197559 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
18 Hb_001913_030 0.1139894743 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_001610_070 0.1143333243 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
20 Hb_028928_020 0.1167573729 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]

Gene co-expression network

sample Hb_003435_040 Hb_003435_040 Hb_006736_040 Hb_006736_040 Hb_003435_040--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_003435_040--Hb_024650_010 Hb_001013_080 Hb_001013_080 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_003849_200 Hb_003849_200 Hb_003435_040--Hb_003849_200 Hb_001518_030 Hb_001518_030 Hb_003435_040--Hb_001518_030 Hb_006736_040--Hb_024650_010 Hb_000028_330 Hb_000028_330 Hb_006736_040--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_006736_040--Hb_001610_070 Hb_006736_040--Hb_001013_080 Hb_006736_040--Hb_001518_030 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080 Hb_001913_030 Hb_001913_030 Hb_001013_080--Hb_001913_030 Hb_001013_080--Hb_000991_080 Hb_001013_080--Hb_003849_200 Hb_000162_070 Hb_000162_070 Hb_001013_080--Hb_000162_070 Hb_008725_020 Hb_008725_020 Hb_001013_080--Hb_008725_020 Hb_000384_020 Hb_000384_020 Hb_000991_080--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_000991_080--Hb_173107_020 Hb_000991_080--Hb_000162_070 Hb_114733_010 Hb_114733_010 Hb_000991_080--Hb_114733_010 Hb_001048_070 Hb_001048_070 Hb_003849_200--Hb_001048_070 Hb_003849_200--Hb_008725_020 Hb_000210_160 Hb_000210_160 Hb_003849_200--Hb_000210_160 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_001518_030--Hb_026048_030 Hb_001518_030--Hb_000028_330 Hb_001310_080 Hb_001310_080 Hb_001518_030--Hb_001310_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11018 274.623 155.821 340.323 1.01914 0.882646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.263556 0.041456 0 50.6372 98.3202

CAGE analysis