Hb_003849_200

Information

Type -
Description -
Location Contig3849: 148950-152751
Sequence    

Annotation

kegg
ID cit:102615523
description BTB/POZ domain-containing protein At1g67900-like
nr
ID XP_006483950.1
description PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
swissprot
ID Q9C9V6
description BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1
trembl
ID A0A067H3W3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006846mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38774: 149045-152681 , PASA_asmbl_38775: 149226-151413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_200 0.0 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
2 Hb_001013_080 0.0823686746 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_001048_070 0.0852488647 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
4 Hb_008725_020 0.0853865902 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
5 Hb_003435_040 0.085519816 - - tonoplast intrinsic protein [Hevea brasiliensis]
6 Hb_000210_160 0.0968866391 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_004634_030 0.0981353474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002097_130 0.1003029762 - - tonoplast intrinsic protein [Hevea brasiliensis]
9 Hb_006736_040 0.1018120871 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
10 Hb_012787_060 0.1047019857 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
11 Hb_001675_310 0.1055426609 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
12 Hb_000589_330 0.1055591355 - - kinase, putative [Ricinus communis]
13 Hb_000613_250 0.1076233862 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
14 Hb_002888_100 0.1097493348 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
15 Hb_000991_080 0.110034617 - - kinase, putative [Ricinus communis]
16 Hb_000563_630 0.112249994 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_012539_100 0.1139189268 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
18 Hb_000162_070 0.1151553986 - - phospholipase C, putative [Ricinus communis]
19 Hb_028928_020 0.115213742 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
20 Hb_016564_060 0.1183616282 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_200 Hb_003849_200 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_001048_070 Hb_001048_070 Hb_003849_200--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_003849_200--Hb_008725_020 Hb_003435_040 Hb_003435_040 Hb_003849_200--Hb_003435_040 Hb_000210_160 Hb_000210_160 Hb_003849_200--Hb_000210_160 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_001913_030 Hb_001913_030 Hb_001013_080--Hb_001913_030 Hb_000991_080 Hb_000991_080 Hb_001013_080--Hb_000991_080 Hb_001013_080--Hb_003435_040 Hb_000162_070 Hb_000162_070 Hb_001013_080--Hb_000162_070 Hb_001013_080--Hb_008725_020 Hb_012787_060 Hb_012787_060 Hb_001048_070--Hb_012787_060 Hb_008021_040 Hb_008021_040 Hb_001048_070--Hb_008021_040 Hb_002888_100 Hb_002888_100 Hb_001048_070--Hb_002888_100 Hb_002641_140 Hb_002641_140 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020 Hb_002325_050 Hb_002325_050 Hb_008725_020--Hb_002325_050 Hb_001562_030 Hb_001562_030 Hb_008725_020--Hb_001562_030 Hb_001198_180 Hb_001198_180 Hb_008725_020--Hb_001198_180 Hb_008725_020--Hb_000991_080 Hb_006736_040 Hb_006736_040 Hb_003435_040--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_003435_040--Hb_024650_010 Hb_003435_040--Hb_000991_080 Hb_001518_030 Hb_001518_030 Hb_003435_040--Hb_001518_030 Hb_000563_630 Hb_000563_630 Hb_000210_160--Hb_000563_630 Hb_001675_310 Hb_001675_310 Hb_000210_160--Hb_001675_310 Hb_000210_160--Hb_003435_040 Hb_034507_090 Hb_034507_090 Hb_000210_160--Hb_034507_090 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170 Hb_002205_150 Hb_002205_150 Hb_004634_030--Hb_002205_150 Hb_142026_010 Hb_142026_010 Hb_004634_030--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_004634_030--Hb_012539_100 Hb_004634_030--Hb_008725_020 Hb_000098_260 Hb_000098_260 Hb_004634_030--Hb_000098_260 Hb_002902_040 Hb_002902_040 Hb_004634_030--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182011 19.6211 13.28 26.4054 0.260255 0.138474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0664602 0.0653719 0.0998124 7.34876 8.43121

CAGE analysis