Hb_001562_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1562: 102906-112838
Sequence    

Annotation

kegg
ID pxb:103939710
description transcription factor bHLH35-like
nr
ID XP_012066631.1
description PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
swissprot
ID Q2HIV9
description Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1
trembl
ID A0A067LEK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02482 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13564: 102924-113007 , PASA_asmbl_13565: 107663-107865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001562_030 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
2 Hb_001198_180 0.0562690681 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
3 Hb_002888_100 0.0800383556 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
4 Hb_008725_020 0.0891400888 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
5 Hb_002739_160 0.0972343535 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_092975_010 0.0994040379 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
7 Hb_030827_080 0.1011761223 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
8 Hb_000060_080 0.101297155 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
9 Hb_004634_030 0.1036292581 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000098_260 0.107048295 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_153180_010 0.1093471667 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
12 Hb_004659_100 0.1109498387 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000631_100 0.11228399 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
14 Hb_000975_090 0.1147125897 - - Zeamatin precursor, putative [Ricinus communis]
15 Hb_002325_050 0.1165481437 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
16 Hb_002897_030 0.1168716576 - - PREDICTED: methylesterase 17 [Jatropha curcas]
17 Hb_004324_100 0.1174861073 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_170632_010 0.1176544823 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_000563_630 0.1192054643 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
20 Hb_004031_050 0.1222238014 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_001562_030 Hb_001562_030 Hb_001198_180 Hb_001198_180 Hb_001562_030--Hb_001198_180 Hb_002888_100 Hb_002888_100 Hb_001562_030--Hb_002888_100 Hb_008725_020 Hb_008725_020 Hb_001562_030--Hb_008725_020 Hb_002739_160 Hb_002739_160 Hb_001562_030--Hb_002739_160 Hb_092975_010 Hb_092975_010 Hb_001562_030--Hb_092975_010 Hb_030827_080 Hb_030827_080 Hb_001562_030--Hb_030827_080 Hb_001198_180--Hb_030827_080 Hb_002897_030 Hb_002897_030 Hb_001198_180--Hb_002897_030 Hb_001198_180--Hb_002739_160 Hb_011355_020 Hb_011355_020 Hb_001198_180--Hb_011355_020 Hb_001198_180--Hb_008725_020 Hb_012787_060 Hb_012787_060 Hb_002888_100--Hb_012787_060 Hb_000098_260 Hb_000098_260 Hb_002888_100--Hb_000098_260 Hb_001048_070 Hb_001048_070 Hb_002888_100--Hb_001048_070 Hb_002888_100--Hb_008725_020 Hb_004634_030 Hb_004634_030 Hb_002888_100--Hb_004634_030 Hb_002325_050 Hb_002325_050 Hb_008725_020--Hb_002325_050 Hb_003849_200 Hb_003849_200 Hb_008725_020--Hb_003849_200 Hb_001013_080 Hb_001013_080 Hb_008725_020--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_008725_020--Hb_000991_080 Hb_002739_160--Hb_030827_080 Hb_153180_010 Hb_153180_010 Hb_002739_160--Hb_153180_010 Hb_010642_010 Hb_010642_010 Hb_002739_160--Hb_010642_010 Hb_008352_020 Hb_008352_020 Hb_002739_160--Hb_008352_020 Hb_001663_090 Hb_001663_090 Hb_002739_160--Hb_001663_090 Hb_092975_010--Hb_000098_260 Hb_002522_040 Hb_002522_040 Hb_092975_010--Hb_002522_040 Hb_000329_720 Hb_000329_720 Hb_092975_010--Hb_000329_720 Hb_000742_130 Hb_000742_130 Hb_092975_010--Hb_000742_130 Hb_002171_020 Hb_002171_020 Hb_092975_010--Hb_002171_020 Hb_092975_010--Hb_004634_030 Hb_030827_080--Hb_010642_010 Hb_030827_080--Hb_008352_020 Hb_030827_080--Hb_153180_010 Hb_030827_080--Hb_001663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.4273 11.658 21.0736 0 0.0583557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.96698 3.06446

CAGE analysis