Hb_011355_020

Information

Type -
Description -
Location Contig11355: 3656-5038
Sequence    

Annotation

kegg
ID rcu:RCOM_0852330
description extensin, proline-rich protein, putative
nr
ID XP_002517395.1
description extensin, proline-rich protein, putative [Ricinus communis]
swissprot
ID Q9LFR3
description Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1
trembl
ID B9RUF0
description Extensin, proline-rich protein, putative OS=Ricinus communis GN=RCOM_0852330 PE=4 SV=1
Gene Ontology
ID GO:0005886
description gibberellin-regulated protein 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04063: 3672-4234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011355_020 0.0 - - extensin, proline-rich protein, putative [Ricinus communis]
2 Hb_002897_030 0.0651932781 - - PREDICTED: methylesterase 17 [Jatropha curcas]
3 Hb_006026_020 0.0758335588 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
4 Hb_004031_050 0.0793013943 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
5 Hb_001198_180 0.0845605295 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
6 Hb_005214_050 0.0909450128 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
7 Hb_000373_260 0.0926204514 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
8 Hb_000149_020 0.1029139973 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
9 Hb_030827_080 0.1080529263 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
10 Hb_010642_010 0.1148926709 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
11 Hb_004970_100 0.1161399985 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
12 Hb_038718_010 0.1175526988 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_002739_160 0.1186919513 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_170632_010 0.1207868227 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_000128_090 0.1207983223 - - Reticuline oxidase precursor, putative [Ricinus communis]
16 Hb_001856_130 0.1242560102 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
17 Hb_153180_010 0.1258965779 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
18 Hb_120040_010 0.1280842898 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_002522_040 0.1286132648 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
20 Hb_029576_070 0.1290193175 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011355_020 Hb_011355_020 Hb_002897_030 Hb_002897_030 Hb_011355_020--Hb_002897_030 Hb_006026_020 Hb_006026_020 Hb_011355_020--Hb_006026_020 Hb_004031_050 Hb_004031_050 Hb_011355_020--Hb_004031_050 Hb_001198_180 Hb_001198_180 Hb_011355_020--Hb_001198_180 Hb_005214_050 Hb_005214_050 Hb_011355_020--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_011355_020--Hb_000373_260 Hb_002897_030--Hb_001198_180 Hb_002897_030--Hb_004031_050 Hb_004659_100 Hb_004659_100 Hb_002897_030--Hb_004659_100 Hb_002897_030--Hb_006026_020 Hb_002897_030--Hb_005214_050 Hb_004970_100 Hb_004970_100 Hb_006026_020--Hb_004970_100 Hb_006026_020--Hb_004031_050 Hb_006026_020--Hb_000373_260 Hb_000149_020 Hb_000149_020 Hb_006026_020--Hb_000149_020 Hb_004031_050--Hb_005214_050 Hb_002522_040 Hb_002522_040 Hb_004031_050--Hb_002522_040 Hb_004031_050--Hb_001198_180 Hb_001562_030 Hb_001562_030 Hb_001198_180--Hb_001562_030 Hb_030827_080 Hb_030827_080 Hb_001198_180--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_001198_180--Hb_002739_160 Hb_008725_020 Hb_008725_020 Hb_001198_180--Hb_008725_020 Hb_005214_050--Hb_000373_260 Hb_000568_020 Hb_000568_020 Hb_005214_050--Hb_000568_020 Hb_005214_050--Hb_004970_100 Hb_000373_260--Hb_004970_100 Hb_000373_260--Hb_004031_050 Hb_000373_260--Hb_000149_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101643 7.59952 6.73232 23.0785 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.43665 1.35339

CAGE analysis