Hb_006026_020

Information

Type -
Description -
Location Contig6026: 39846-42913
Sequence    

Annotation

kegg
ID rcu:RCOM_1720390
description protein binding protein, putative
nr
ID XP_012085112.1
description PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
swissprot
ID Q9FKB6
description BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=2 SV=1
trembl
ID B9S529
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1720390 PE=4 SV=1
Gene Ontology
ID GO:0005886
description btb poz domain-containing protein at5g48800

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50617: 39925-40826 , PASA_asmbl_50619: 41547-42320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006026_020 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
2 Hb_011355_020 0.0758335588 - - extensin, proline-rich protein, putative [Ricinus communis]
3 Hb_004970_100 0.0856092234 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
4 Hb_004031_050 0.0921201493 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
5 Hb_000373_260 0.0938422679 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
6 Hb_002897_030 0.0995971035 - - PREDICTED: methylesterase 17 [Jatropha curcas]
7 Hb_000149_020 0.1022933747 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
8 Hb_005056_120 0.1050368138 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005214_050 0.1159554633 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
10 Hb_001675_290 0.117407787 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
11 Hb_120040_010 0.1198716703 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_036029_020 0.1276771869 - - PREDICTED: patellin-3-like [Jatropha curcas]
13 Hb_001198_180 0.1333035888 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
14 Hb_000714_070 0.1342285206 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
15 Hb_038718_010 0.1360442916 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_000860_030 0.1360810222 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002768_040 0.1370027153 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001856_130 0.138550463 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
19 Hb_002522_040 0.1406068486 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
20 Hb_001417_090 0.1406816143 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]

Gene co-expression network

sample Hb_006026_020 Hb_006026_020 Hb_011355_020 Hb_011355_020 Hb_006026_020--Hb_011355_020 Hb_004970_100 Hb_004970_100 Hb_006026_020--Hb_004970_100 Hb_004031_050 Hb_004031_050 Hb_006026_020--Hb_004031_050 Hb_000373_260 Hb_000373_260 Hb_006026_020--Hb_000373_260 Hb_002897_030 Hb_002897_030 Hb_006026_020--Hb_002897_030 Hb_000149_020 Hb_000149_020 Hb_006026_020--Hb_000149_020 Hb_011355_020--Hb_002897_030 Hb_011355_020--Hb_004031_050 Hb_001198_180 Hb_001198_180 Hb_011355_020--Hb_001198_180 Hb_005214_050 Hb_005214_050 Hb_011355_020--Hb_005214_050 Hb_011355_020--Hb_000373_260 Hb_003777_150 Hb_003777_150 Hb_004970_100--Hb_003777_150 Hb_004970_100--Hb_005214_050 Hb_004970_100--Hb_000373_260 Hb_001417_090 Hb_001417_090 Hb_004970_100--Hb_001417_090 Hb_004970_100--Hb_004031_050 Hb_004031_050--Hb_005214_050 Hb_004031_050--Hb_002897_030 Hb_002522_040 Hb_002522_040 Hb_004031_050--Hb_002522_040 Hb_004031_050--Hb_001198_180 Hb_000373_260--Hb_005214_050 Hb_000373_260--Hb_004031_050 Hb_000373_260--Hb_000149_020 Hb_002897_030--Hb_001198_180 Hb_004659_100 Hb_004659_100 Hb_002897_030--Hb_004659_100 Hb_002897_030--Hb_005214_050 Hb_120040_010 Hb_120040_010 Hb_000149_020--Hb_120040_010 Hb_000740_080 Hb_000740_080 Hb_000149_020--Hb_000740_080 Hb_000149_020--Hb_011355_020 Hb_000897_010 Hb_000897_010 Hb_000149_020--Hb_000897_010 Hb_000149_020--Hb_002897_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135201 3.10777 2.42863 10.7063 0.0467682 0.0645967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.43 0.744929

CAGE analysis